Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20i20
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    30   0.35 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   4.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.4  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 369 INARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGS 476
           I  R+P  VP   +S KP  IP  +   LN+ +E S
Sbjct: 588 IPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESS 623


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
 Frame = -1

Query: 596 LSHSQYKLLSKFLIHHKCSWKLVIIFRYNFFYCIFQNLCRT--------PFDWNVKSMFQ 441
           L  SQ++ L K   HH  ++ +   F + FF+  F + CR         P+D NV   F 
Sbjct: 51  LVSSQFRRL-KLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFC 109

Query: 440 LWRYSSWFL*YF*LWHNLRY 381
            + Y S F  +  L+ +L +
Sbjct: 110 FFFYFSLFSFFSFLFTSLHF 129


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 402 LKVSKKPRTIPPKLKHRLNIPIE---GSPTEV---LENTIKEVISEYNH 530
           LK+  K R+IP   KHR  +P++     P      L N   E +++Y+H
Sbjct: 251 LKIKAKKRSIPLSQKHRTLVPVDFEYAGPNLCAFDLANYFAEWMADYHH 299


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 401 IKSIKE-TKNYTAKVET*T*HSNRRESYRGSGKYNKR 508
           I  +K+ T+    + +T T HSNRRES R S  Y+ R
Sbjct: 142 ISKLKDRTEASKEESKTVTDHSNRRESRRESTYYDSR 178


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 575  LLSKFLIHHKCSWKLVIIFRYNFF 504
            + S+F++ +K  W LVI   YN F
Sbjct: 2259 ITSRFIVRNKTRWSLVIAEPYNDF 2282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,140
Number of Sequences: 5004
Number of extensions: 55388
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)