Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20i20
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY557611-1|AAT52049.1| 1844|Homo sapiens chromosome fragility as... 32 1.6
AJ314648-1|CAC44537.2| 1844|Homo sapiens ATP(GTP)-binding protei... 32 1.6
AF023457-1|AAB82797.1| 598|Homo sapiens protein phosphatase wit... 31 5.0
AF023456-1|AAB82796.1| 753|Homo sapiens protein phosphatase wit... 31 5.0
BC062352-1|AAH62352.1| 771|Homo sapiens TAF3 protein protein. 30 6.6
AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 6.6
AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 6.6
AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,... 30 6.6
AL117661-1|CAB56032.1| 681|Homo sapiens hypothetical protein pr... 30 6.6
AJ292190-1|CAC34475.1| 727|Homo sapiens TAFII140 protein protein. 30 6.6
>AY557611-1|AAT52049.1| 1844|Homo sapiens chromosome fragility
associated gene 1 protein.
Length = 1844
Score = 32.3 bits (70), Expect = 1.6
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = +3
Query: 255 LNFATSKEGRACYLKLSEILNPHTV----VNRLNRATFGCYRINARIPEVVPQLKVSKKP 422
+N ++ + GR +L E H V VN F Y I ++ KV P
Sbjct: 1156 VNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGKSPKKISSPKKVVTSP 1215
Query: 423 RTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPGAFVMNKK 563
R +PP + + P P + L N K N++ G + N K
Sbjct: 1216 RKVPPP-SPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENNK 1261
>AJ314648-1|CAC44537.2| 1844|Homo sapiens ATP(GTP)-binding protein
protein.
Length = 1844
Score = 32.3 bits (70), Expect = 1.6
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = +3
Query: 255 LNFATSKEGRACYLKLSEILNPHTV----VNRLNRATFGCYRINARIPEVVPQLKVSKKP 422
+N ++ + GR +L E H V VN F Y I ++ KV P
Sbjct: 1156 VNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGKSPKKISSPKKVVTSP 1215
Query: 423 RTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPGAFVMNKK 563
R +PP + + P P + L N K N++ G + N K
Sbjct: 1216 RKVPPP-SPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENNK 1261
>AF023457-1|AAB82797.1| 598|Homo sapiens protein phosphatase with
EF-hands-2 short form protein.
Length = 598
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 216 RKLATVIRGNFSALNFATSKEGRACYLKLSEILNPHTVVNRLNRAT 353
RK+ T+ FSA N+ R Y+KL L PH V + N+ T
Sbjct: 501 RKVLTI----FSASNYYEVGSNRGAYVKLGPALTPHIVQYQANKVT 542
>AF023456-1|AAB82796.1| 753|Homo sapiens protein phosphatase with
EF-hands-2 long form protein.
Length = 753
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 216 RKLATVIRGNFSALNFATSKEGRACYLKLSEILNPHTVVNRLNRAT 353
RK+ T+ FSA N+ R Y+KL L PH V + N+ T
Sbjct: 501 RKVLTI----FSASNYYEVGSNRGAYVKLGPALTPHIVQYQANKVT 542
>BC062352-1|AAH62352.1| 771|Homo sapiens TAF3 protein protein.
Length = 771
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 521 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 574
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 575 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 604
>AL390294-1|CAH73142.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 464 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 517
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 518 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 547
>AL353754-1|CAH73451.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 464 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 517
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 518 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 547
>AL159172-1|CAI15661.1| 929|Homo sapiens TAF3 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 140kD
protein.
Length = 929
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 464 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 517
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 518 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 547
>AL117661-1|CAB56032.1| 681|Homo sapiens hypothetical protein
protein.
Length = 681
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 442 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 495
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 496 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 525
>AJ292190-1|CAC34475.1| 727|Homo sapiens TAFII140 protein protein.
Length = 727
Score = 30.3 bits (65), Expect = 6.6
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +3
Query: 363 YRINARIPEVVPQLKVSKKPRTIPPKLKHRLNIPIEGSPTEVLENTIKEVISEYNHKFPG 542
+ ++A I EVV + K+ P +PP + ++ P PT + +V E K P
Sbjct: 464 WTMDASIDEVVRKAKLGT-PSNMPPNFPY-ISSPSVSPPTP---EPLHKVYEEKT-KLPS 517
Query: 543 AFVMNKKLGKKLILGMRKIIAQRLERIMESD 635
+ + KKL K+L M+K QR +R E D
Sbjct: 518 SVEVKKKLKKELKTKMKKKEKQR-DREREKD 547
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,705,027
Number of Sequences: 237096
Number of extensions: 1793975
Number of successful extensions: 3083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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