Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20i07
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   6.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   6.8  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   6.8  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    24   9.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    24   9.0  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 323 TYWRMSEYFCTYEIFCCIRNI 385
           TYW    Y CT+   CCI  I
Sbjct: 486 TYWVTLSYLCTFT--CCIMTI 504


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 231 SSWCTSIKFTYVYTIAIITRRNNSIIAKCILLIGECPSI 347
           ++WC  I+      I  I +  + ++ + +LL+  CP +
Sbjct: 852 NAWCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAPCPIV 890


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +2

Query: 188 RHARVVKNRNRITHLFMVHIYQVYIRVHYCNNH-*KKQQYNSKMHFTYWRMSEY 346
           RH R  K R R  H    H      R H   +H      Y+SK    Y R  E+
Sbjct: 134 RHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREH 187


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 158 DYYFGRRFNERHARVVKNRNRITHLFMVHIYQ 253
           DY      N+R +R+++ R R+  LF+  + Q
Sbjct: 134 DYLINVTKNQRMSRMLEERKRLLQLFLRRVAQ 165


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 6   FSCSWPSSPRILTIVSSSNNWQLANPSRHRLQSLCVEHG 122
           FS SWP +P I   V S+  +  A  S        + HG
Sbjct: 473 FSISWPQNPSISGSVHSATTFDKAQLSNTEDSYDNISHG 511


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 158 RRQYTRMSQNFDAVLHTQRLQSVPRRISQ 72
           RR+   +     +VL T+++Q++ RRIS+
Sbjct: 768 RREVNSLESQELSVLDTEKIQTLERRISE 796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,115
Number of Sequences: 5004
Number of extensions: 33924
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)