Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20h22
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 32 0.051
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 31 0.16
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 29 0.36
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.48
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 29 0.48
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 0.63
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 27 1.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 1.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 1.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.6
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 3.4
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 26 4.5
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 4.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.5
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 5.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 5.9
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 5.9
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.9
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 5.9
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 25 5.9
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 5.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.8
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 25 7.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.8
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 7.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.8
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 32.3 bits (70), Expect = 0.051
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 139 RKRLARLRPPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDP 318
R+ LA+LRP + GT + +YF A D ++ + + + TE+ + +P
Sbjct: 100 REGLAKLRPEATRNEGTSENSYFVSLEEA--QDHAQQYKLGIWGPSDDVVVTEKANPANP 157
Query: 319 SEVIE-RKDEKDKGYIEGSELGSHVESRVF 405
++ ++ K +K G +E G V R+F
Sbjct: 158 AKFLKAHKGKKLNGIVETIRNGDQVRVRLF 187
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 30.7 bits (66), Expect = 0.16
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 103 NAEKLLTGHMVYRKRLARLRPPRNKKYGTGKKTYFDDDGNALNLDEYEKQMQHVEECT-Q 279
+++KL T V ++ KKY T KKT NL++YE++ + E T +
Sbjct: 115 HSQKLQTSQQVLTNQIKSYE----KKYYTLKKTKSAYYNKCRNLEDYEEESKESNETTSE 170
Query: 280 TISDTERKSEHDPSEVIERKDE 345
I+D S ++E D+
Sbjct: 171 AITDLTTVSSPQQQSLLENDDD 192
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 29.5 bits (63), Expect = 0.36
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = +1
Query: 97 CLNAEKLLTGHMVYRKRLARLRPPRNKKYGT--GKKTYFDDDGNALN--LDEYEKQMQHV 264
C+ +LLT M R + Y +T +++ AL+ +DE KQ+
Sbjct: 143 CVECAELLTEEMSKTLRALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEK 202
Query: 265 EECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGSELGSHV-ESRVFERTMKVQDSCDA 441
EE + ISD K + + E +EK+K Y E E +++ + ++ + +++ Q C
Sbjct: 203 EEKIEEISDETDKLQ---KLLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLERQYDCAN 259
Query: 442 ADMPQDSEE 468
+ +S +
Sbjct: 260 LEFEHNSRK 268
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.48
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 286 SDTERKSEHDPSEVIERKDEKDKGYIEGSEL--GSHVESRVFERTMKVQDSCDAADMPQD 459
S +E S EVI + +EK + E S E V + K + S D++
Sbjct: 113 SSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSS 172
Query: 460 SEEQVEDNSVTQQE 501
SE + E +S +E
Sbjct: 173 SESESESSSSESEE 186
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +1
Query: 274 TQTISDTERKSEHDPSEVIERKDEKDKGYIEGSELGSHVESRVFERTMKVQDSCDAADMP 453
+++ S++ + EV+E+ +EK +G SE S ES + + + DS ++D
Sbjct: 173 SESESESSSSESEEEEEVVEKTEEKKEG---SSESSSDSESS-SDSSSESGDSDSSSD-- 226
Query: 454 QDSEEQVEDNSVTQQE 501
+SE ED + E
Sbjct: 227 SESESSSEDEKKRKAE 242
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 295 ERKSEHDPSEVIERKDEKDKGYIEGSELGSHVESRVFERTMKVQDSCDAADMPQDSEEQV 474
ERK EH+ + K+E+++ +G ++ E + + +++V S DA + +EE++
Sbjct: 128 ERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDK--DGSLEVGKSHDAMTRTKSAEEEI 185
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.7 bits (61), Expect = 0.63
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Frame = +1
Query: 193 KKTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERKSEHD-PSEVIERKDEKDKGYIEG 369
K +YFD D + +++ + E+ ++ E S++E S+ D SE +E + G +
Sbjct: 1307 KSSYFDSDSD-ISMSDNEEDVEMRSEDQSDTSESEVGSKDDVQSEEVENLE--SAGDEDE 1363
Query: 370 SELGSHVESRVFERTMKVQDSCDAADMPQDSEEQVEDNSVTQQETSXXXXXXXXYSRVEE 549
E S +++ F+ T D D D E ED +E + E+
Sbjct: 1364 EEEPSALQANGFDWT----DGSTVFDKLADDTEDSEDEE--DEEPKRKKSKSDRFDDEEK 1417
Query: 550 DASEMP 567
D E+P
Sbjct: 1418 DLDEIP 1423
>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 211 DDGNALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGY 360
++ NA+ +++ +++ Q +EE + ++ E K H +E E KG+
Sbjct: 109 EETNAILIEQSQRETQAIEERHRKEAEQENKKFHGTPVTVESFTEWKKGF 158
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 220 NALNLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDK 354
+++N+D E+ VEE +TIS E+ S+ + + E+K EK K
Sbjct: 433 SSVNIDGDEEVDIDVEETVETIS--EKPSKKEKKDKKEKKKEKSK 475
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +1
Query: 208 DDDGNALNLDEYEKQMQHVEECTQTISDTE-RKSEHDPSEVIERKDEKDKGYIEGSELGS 384
+DD A + EKQ V+ ++ +DT K E ++ + DK E
Sbjct: 44 NDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDK-----KEDED 98
Query: 385 HVESRVFERTMKVQDSCDAADMPQDSEEQVE 477
+VE E ++ D D +D E++ E
Sbjct: 99 NVEENEEEADANEEEEEDEEDDEEDEEDEDE 129
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.1 bits (57), Expect = 1.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 394 FPRGSQVPNLQYILCLFHL 338
F G +V ++Y LC+FHL
Sbjct: 237 FAAGDRVARIEYCLCIFHL 255
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = -1
Query: 449 ISAASHESCTFIVRSKTLLSTWLPSSEPSIYPLSFSSFRSITSEGSCSLFLSVSD 285
++ +S + T + S TL + WLP ++P+ P S + ++ ++ +S+SD
Sbjct: 253 VTPSSINNHTAVPLSPTL-AVWLPMTQPTFQPPSANVYQPASNANQVITPVSISD 306
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/86 (24%), Positives = 34/86 (39%)
Frame = +1
Query: 229 NLDEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGSELGSHVESRVFE 408
N DE +EE + D K +HDP+E E E E + E + F+
Sbjct: 8 NKDESISTKNALEEKSNETKDETSKRKHDPAEE-ESAVSTKVSKSEPLEDKGNAEVKEFK 66
Query: 409 RTMKVQDSCDAADMPQDSEEQVEDNS 486
T K ++ + ++ Q E N+
Sbjct: 67 ETTKSNGVKPEVEITESTKIQKESNT 92
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 196 KTYFDDDGNALNLDEYEKQMQHVEECTQTISDTERK 303
+T+ D L + EY + +Q E C++TI DT K
Sbjct: 93 ETFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAK 128
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 175 KKYGTGKKTYFDDDGNALNLDEYEKQMQHVEE 270
+K+G+G YF GN LDE+EK+++ E+
Sbjct: 338 QKWGSG--CYFYGLGNDEQLDEFEKRLESGEK 367
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 392 STWLPSSEPSIYPLSFSSFRSITSEGSCSL 303
S+ LPSS PS PLS ++ + TS S L
Sbjct: 279 SSLLPSSTPSSTPLSSANSTTATSASSTPL 308
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 208 DDDGNALNLDEYEKQMQHVEE 270
DD N +NL E EK+ + +E+
Sbjct: 1406 DDSSNKINLSEKEKEKESIED 1426
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 242 MKNKCSMSKNALKRYRTQRERANTILQKLLNGKMKKTKDI 361
+KN C+ K + Y Q + L+ LLN + K K I
Sbjct: 417 VKNDCTSEKKTRQSYEQQTVKIEEQLKFLLNKEKKLKKSI 456
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 128 TWFIENGWPAYVPPEIRNMELERKHTLTMTVMHSIWMSMKNK 253
TWFIE+ + +P + R + + L V H+ M +K++
Sbjct: 493 TWFIESNYHDGLPSDSRKITYRKPGFLESFVEHNKLMWLKDR 534
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 40 DDEETASETIKSTFEIMGFCLNAEKLLTGHMVYRKRLA 153
DDE + +KS F+I FC LL+ + +K LA
Sbjct: 314 DDE--LDKHLKSDFDIESFCFLLHHLLSLYQTQKKELA 349
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +2
Query: 167 PEIRNMELERKHTLTMTVMHSIWMSMKNKCSMSKNALKRYRTQRERANTILQKLLNGKMK 346
P N+ + RK L+ +++S + + S SKN +++ + + + + +
Sbjct: 216 PREENVTITRKTKLSSNILYSDSDTERQSDSGSKNVARQFSRIKRKRKVLSSSSEDDESS 275
Query: 347 KTKDILK 367
+D+LK
Sbjct: 276 SPEDLLK 282
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 365 SIYPLSFSSFRSITSEGSCSLFLSVSDI 282
S+YP+ ++F + E +FL +SD+
Sbjct: 90 SLYPIILNAFEYLIKEFKKDVFLKISDV 117
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/75 (14%), Positives = 33/75 (44%)
Frame = +1
Query: 265 EECTQTISDTERKSEHDPSEVIERKDEKDKGYIEGSELGSHVESRVFERTMKVQDSCDAA 444
+E + ++ + H S+ + D+G + + + ++ R FE+ +K ++
Sbjct: 41 DEDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKE 100
Query: 445 DMPQDSEEQVEDNSV 489
+ + S+E + +
Sbjct: 101 ESLESSKEAMRQAEI 115
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 139 RKRLARLRPPRNKKYGTGKKTYFDDDGNAL 228
++++A + K + K YFDD+GNA+
Sbjct: 577 KEKMASSKKAMLKYKKSADKVYFDDEGNAI 606
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +1
Query: 208 DDDGNALNLDEYEKQMQHVEECTQTISDTE 297
DDD + +L ++E + + +++ T + +TE
Sbjct: 440 DDDNDVNDLLDFETEREDIDDLTDEVMETE 469
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 112 KLLTGHMVYRKRLA--RLRPPRNKKYGTGKKTYFDDDGNALNLDEYE 246
+L G Y K L ++R R TGK+ YF DG + L+ +E
Sbjct: 390 QLDNGGFYYSKHLNYYKVRSFRFTPVNTGKRHYFALDGESYPLEPFE 436
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 25 ISHEYDDEETASETIKSTFEIMGFCLNAEKLLTGHMVYRKR 147
+SHE +D +T E +K FE LN+E ++ +K+
Sbjct: 110 LSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKK 150
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 85 IMGFCLNAEKLLTGHMVYRKRLARLRPPRNKKYGTGKK 198
I+ F E++L Y L+R RNK YGT KK
Sbjct: 72 IVDFPTPKERMLAVLKWYITGLSREYASRNKNYGTEKK 109
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 7.8
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 193 KKTYFDDDGNALNL--DEYEKQMQHVEECTQTISDTERKSEHDPSEVIERKDEKDKGYIE 366
K+ DD + L++ EYE + + +++ D + ++ V + DEKD+ +E
Sbjct: 1037 KRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVE 1096
Query: 367 GSELGSHVESRVFERTMKVQD 429
EL S ++ E +++D
Sbjct: 1097 LEELTSKY-GKLGEENAQIKD 1116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.127 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,739
Number of Sequences: 5004
Number of extensions: 43582
Number of successful extensions: 162
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -