Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h11
         (718 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075556-1|AAL68363.1|  113|Drosophila melanogaster RH61745p pro...    33   0.51 
AE014298-2540|AAF48710.2|  113|Drosophila melanogaster CG12998-P...    33   0.51 
AY118420-1|AAM48449.1|  250|Drosophila melanogaster RE74758p pro...    30   3.6  
AE014296-1850|AAF50135.2|  250|Drosophila melanogaster CG12523-P...    30   3.6  
U49724-1|AAB08449.1|  635|Drosophila melanogaster merlin protein.      29   4.8  
AY094998-1|AAM11326.1|  635|Drosophila melanogaster GH01330p pro...    29   4.8  
AE014298-2915|AAF49005.1|  635|Drosophila melanogaster CG14228-P...    29   4.8  
X71974-1|CAA50794.1|  196|Drosophila melanogaster GCR 17 protein.      29   8.4  
BT009951-1|AAQ22420.1|  295|Drosophila melanogaster RH51767p pro...    29   8.4  
AY071088-1|AAL48710.1|  173|Drosophila melanogaster RE15531p pro...    29   8.4  
AE014298-2545|AAF48713.1|  173|Drosophila melanogaster CG10598-P...    29   8.4  
AE014298-2544|AAN09437.1|  230|Drosophila melanogaster CG10598-P...    29   8.4  
AE014297-1899|AAF55098.1|  556|Drosophila melanogaster CG14855-P...    29   8.4  
AE014297-425|AAF51897.2|  295|Drosophila melanogaster CG1154-PA ...    29   8.4  

>AY075556-1|AAL68363.1|  113|Drosophila melanogaster RH61745p
           protein.
          Length = 113

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 704 WSGN-GWSGNVCSGNGWSGRFYGCSGNGWS 618
           W GN GW GN    +GWS    G + NGWS
Sbjct: 79  WGGNSGWGGN----SGWSSGNSGWNSNGWS 104



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -3

Query: 704 WSGN-GWSGNVC--SGNGWSGRFYGCSGN-GWS 618
           W GN GW GN    S +GW G   G  GN GWS
Sbjct: 61  WGGNSGWGGNSGWGSNSGWGGN-SGWGGNSGWS 92



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G+GW GN    +GW G     S +GW G
Sbjct: 54  GGGGGSGWGGN----SGWGGNSGWGSNSGWGG 81


>AE014298-2540|AAF48710.2|  113|Drosophila melanogaster CG12998-PA
           protein.
          Length = 113

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 704 WSGN-GWSGNVCSGNGWSGRFYGCSGNGWS 618
           W GN GW GN    +GWS    G + NGWS
Sbjct: 79  WGGNSGWGGN----SGWSSGNSGWNSNGWS 104



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -3

Query: 704 WSGN-GWSGNVC--SGNGWSGRFYGCSGN-GWS 618
           W GN GW GN    S +GW G   G  GN GWS
Sbjct: 61  WGGNSGWGGNSGWGSNSGWGGN-SGWGGNSGWS 92



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G+GW GN    +GW G     S +GW G
Sbjct: 54  GGGGGSGWGGN----SGWGGNSGWGSNSGWGG 81


>AY118420-1|AAM48449.1|  250|Drosophila melanogaster RE74758p
           protein.
          Length = 250

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 716 THGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 612
           ++G  S  GWS    S  GWS    G S  GW+ +
Sbjct: 213 SYGAPSSGGWSSGGASNGGWSAG--GSSSGGWASQ 245


>AE014296-1850|AAF50135.2|  250|Drosophila melanogaster CG12523-PA
           protein.
          Length = 250

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 716 THGRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSGR 612
           ++G  S  GWS    S  GWS    G S  GW+ +
Sbjct: 213 SYGAPSSGGWSSGGASNGGWSAG--GSSSGGWASQ 245


>U49724-1|AAB08449.1|  635|Drosophila melanogaster merlin protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 132 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 260
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>AY094998-1|AAM11326.1|  635|Drosophila melanogaster GH01330p
           protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 132 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 260
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>AE014298-2915|AAF49005.1|  635|Drosophila melanogaster CG14228-PA
           protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 132 KRRAEAEKASYDHYCDIDYCLEEERESNSKLLEVVSEGRNSSS 260
           KR AE EK   +  C        ERE+ ++LLE ++ GR SS+
Sbjct: 440 KREAETEKLRKELIC----AKMAEREATARLLEFLNSGRKSST 478


>X71974-1|CAA50794.1|  196|Drosophila melanogaster GCR 17 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G G+SG   +G G+SG      G G+SG
Sbjct: 75  GGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106


>BT009951-1|AAQ22420.1|  295|Drosophila melanogaster RH51767p
           protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 710 GRWSG--NGWS-GNVCSGNGWSGRFYGCSGNGWSGR 612
           G+ SG  +GWS G    G GWS    G  G GW  R
Sbjct: 218 GKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGWDRR 253


>AY071088-1|AAL48710.1|  173|Drosophila melanogaster RE15531p
           protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G G+SG   +G G+SG      G G+SG
Sbjct: 75  GGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106


>AE014298-2545|AAF48713.1|  173|Drosophila melanogaster CG10598-PA,
           isoform A protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G G+SG   +G G+SG      G G+SG
Sbjct: 75  GGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 106


>AE014298-2544|AAN09437.1|  230|Drosophila melanogaster CG10598-PB,
           isoform B protein.
          Length = 230

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 710 GRWSGNGWSGNVCSGNGWSGRFYGCSGNGWSG 615
           G   G G+SG   +G G+SG      G G+SG
Sbjct: 132 GGGGGGGYSGGYSNGGGYSGGGGYSGGGGYSG 163


>AE014297-1899|AAF55098.1|  556|Drosophila melanogaster CG14855-PA
           protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 102 LKEMRRNIYIKRRAEAEKASYDH--YCDIDYCLEEERESNSKLLEVVSEGRNSSS 260
           ++ + R   I RR  A+K   D   YC+  Y  ++ +E ++KLL+++   R  S+
Sbjct: 274 IRRLERVAKINRRQVADKDFKDFRIYCEQHYRKDKNQEEHAKLLDMLKTPRMRST 328


>AE014297-425|AAF51897.2|  295|Drosophila melanogaster CG1154-PA
           protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 710 GRWSG--NGWS-GNVCSGNGWSGRFYGCSGNGWSGR 612
           G+ SG  +GWS G    G GWS    G  G GW  R
Sbjct: 218 GKSSGGSSGWSSGGGGGGGGWSSGGGGGGGGGWDRR 253


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,107,317
Number of Sequences: 53049
Number of extensions: 485068
Number of successful extensions: 1990
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)