Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h10
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0348 - 3076395-3078236                                           31   1.00 
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   2.3  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    29   4.0  
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609...    28   7.0  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   9.3  

>08_01_0348 - 3076395-3078236
          Length = 613

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 398 ITSWSFTMGKLSSTKRVQVSRKN--SLPLQLTI--NFMVSGFTLRISLKRVSFWFLPGPK 231
           + SW+  +  LS +  V+ ++    ++P++ ++  N MVSGF     +     WF   P+
Sbjct: 111 VVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPE 170

Query: 230 KGSS 219
           KG +
Sbjct: 171 KGDA 174


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 106  KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEI 276
            K+  N+   +   KRK+ LVE+ QE EK     D+ +  ED F    + +  T+++++
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSFYAQKEAELDTIYRKV 2387


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +1

Query: 154 KHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEF 333
           K +   +Q + +W  +D+ +     F   G    L  F++ +    D  + +V W G ++
Sbjct: 426 KEVYSEDQRKLEWFEVDHAIACRRKFHHEGLCDVLATFQDNQDF--DGYEFLVKWKGLDY 483

Query: 334 LRETW 348
              TW
Sbjct: 484 CEATW 488


>03_05_1150 -
           30758981-30759778,30759970-30760729,30760823-30760920,
           30761997-30762521
          Length = 726

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 597 FMIGAAAALFSQTNSVFVVHAHVGWLHN----SDYFVGHVVFFPPKSVLSEELVAPVGA 433
           FMIG A       N +F ++  +  +H     +D  +GH +  PP+ + + +LV  V A
Sbjct: 471 FMIGYALPGKPIANLLFKIYGRISTVHALSFLADLKLGHYMKIPPRCMYTAQLVGTVVA 529


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 429 GFEVGDEVHVHHLLVVYN 376
           GF  GD + VHH+LV  N
Sbjct: 159 GFRTGDTIAVHHILVFLN 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,109
Number of Sequences: 37544
Number of extensions: 418497
Number of successful extensions: 1129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)