Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h09
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   1.3  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    24   2.3  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    23   4.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    23   5.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    23   5.4  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    23   7.1  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    22   9.4  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    22   9.4  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    22   9.4  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    22   9.4  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 17  SCTLEKFYLSGTAARNNTFARNSTNLT 97
           + T   F+L+GT + N T + NST+ T
Sbjct: 229 NATNSTFWLNGTNSTNGTNSTNSTSTT 255


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 65  NTFARNSTNLTCIYCVTEYFKIIFTNSKK 151
           N F   S    C YC+TE F +I+  + K
Sbjct: 198 NEFDLISEPAKCPYCMTERFGVIYKPNPK 226


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 119 TPLHSRYMLSLLNYVQKYCYA---LRFRINKISPKY 21
           T LHS + L LLN +Q +  A       IN I PK+
Sbjct: 471 THLHSDHYLGLLNVLQAWNKANTNNSMHINIIGPKF 506


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 14  FSCTLEKFYLSGTAARNNTFARNSTNLTCIYCVTEYFK 127
           ++  L  + L+ T+  +  F RN     C+Y    Y K
Sbjct: 487 YNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLK 524


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 122 NTPLHSRYMLSLLNYVQKYCYALRF 48
           N   H   + ++LN   + C+ALRF
Sbjct: 420 NLGSHGLILANILNLSLRICFALRF 444


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 104 RYMLSLLNYVQKYCYALRFRINKIS 30
           RYML++LN+   Y   L F + KIS
Sbjct: 254 RYMLNVLNFDLSYPSPLNF-LRKIS 277


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 25  FGEILFIRNRSA*QYFCT*FNKLNMYLLCNGV 120
           FG  +F+  +S   +    +NKLN+ L  +GV
Sbjct: 168 FGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGV 199


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 164 FFFYAFWSW*KLF*NTPLHSRYMLSL 87
           F F AFW W  +    P+   Y+ +L
Sbjct: 102 FIFSAFWLWHHVSPAVPITFAYLYAL 127


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 134 KLF*NTPLHSRYMLSLLNYVQKY 66
           KL  N PL + Y + LLN ++ Y
Sbjct: 208 KLKSNVPLDTDYWVDLLNSLKSY 230


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 120 YSVTQ*IHVKFVELRAKVLLRAAVPDK*NFSKV 22
           + + Q +H+ F     K+L + A+ D+ ++  V
Sbjct: 175 FVIAQQLHIDFASFEFKILKKPAMDDEFDWDSV 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,472
Number of Sequences: 5004
Number of extensions: 9510
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)