Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h09
         (164 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    29   0.33 
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    29   0.33 
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    28   0.77 
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    28   0.77 
AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 5   NTVFSCTLEKFYLSGTAARNNTFARNSTNLTCIYCVT 115
           NT  SC  +KF  SGTA   + FA    N+T   CVT
Sbjct: 166 NTTSSCIWDKF--SGTAEGYDNFAPGHPNVTIGECVT 200


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 14  FSCTLEKFYLSGTAARNNTFARNSTNLTCIYCVT 115
           FSCT +    SGT A  + FA+++ N  CIY +T
Sbjct: 177 FSCTWD--VKSGTTAAYSNFAKDNPNGDCIYYMT 208


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  SGTAARNNTFARNSTNLTCIYCVTEYFKIIFTNSKKRKKK 163
           SGT  R ++F  NST +TC+   T+        +KK  KK
Sbjct: 334 SGTQGRIDSFFGNSTKVTCVTAATKRKAEEAEKAKKGAKK 373


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  SGTAARNNTFARNSTNLTCIYCVTEYFKIIFTNSKKRKKK 163
           SGT  R ++F  NST +TC+   T+        +KK  KK
Sbjct: 334 SGTQGRIDSFFGNSTKVTCVTAATKRKAEEAEKAKKGAKK 373


>AF101319-4|AAC69352.1|  463|Caenorhabditis elegans Hypothetical
           protein K08D9.2 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 163 FFFTLFGVGENYFKILRY 110
           F+FTLF + E  FKIL Y
Sbjct: 216 FYFTLFNINEYDFKILSY 233


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 26  LEKFYLSGTAARNNTFARNSTNLTCIY-CVTEYFKIIFTNSKKRKK 160
           ++ F+L G     N +     +L   +  +TE  K I+ N+K  KK
Sbjct: 709 VKMFFLEGDDIERNIYRSTKVSLKPSFEAITESVKTIYENAKTHKK 754


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/41 (21%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 14   FSCTLEKFYLSGTAARNNTFARNSTNLTCIYCVTE-YFKII 133
            F C++++ +   + ++ +  A +S++LT  +C++  YF ++
Sbjct: 1071 FKCSMKRLHPPTSPSKISKSASSSSDLTSFFCISSPYFYLL 1111


>U53336-2|AAA96175.1|  571|Caenorhabditis elegans Hypothetical
           protein K07C11.4 protein.
          Length = 571

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 14  FSCTLEKFYLSGTAARNNTFARNS 85
           FS  +E+FYLSG    N++F  N+
Sbjct: 386 FSGLVEEFYLSGPMTGNSSFYLNA 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,337
Number of Sequences: 27780
Number of extensions: 53364
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)