Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h09
         (164 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.34 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   1.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   1.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   2.4  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              19   4.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    19   7.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    18   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    18   9.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 116 PLHSRYMLSLLNYVQKYCYALRF 48
           PL   Y+L++ N +QK  Y   F
Sbjct: 370 PLEYEYVLAVSNRIQKVIYGFDF 392


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 122 NTPLHSRYMLSLLNYVQK 69
           N P+   YML L N +QK
Sbjct: 368 NKPVKDEYMLVLSNRMQK 385


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 122 NTPLHSRYMLSLLNYVQK 69
           N P  + YML+L N +QK
Sbjct: 373 NDPEGNEYMLALSNRMQK 390


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 160 FFTLFGVGENYF 125
           +FT +G GE YF
Sbjct: 299 YFTKYGSGECYF 310


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 2   LNTVFSCTLEKF 37
           L   F+C LEKF
Sbjct: 68  LKCYFNCVLEKF 79


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +2

Query: 41  LSGTAARNNTFARNSTNLTCIYCVTEYFKII 133
           LS     NN +   + N    Y   +Y+ II
Sbjct: 88  LSNNYNYNNNYNNYNNNYNTNYKKLQYYNII 118


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 23  TLEKFYLSGTAARNNT 70
           TLEKF+     ++ NT
Sbjct: 210 TLEKFFTDYCNSKTNT 225


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 23  TLEKFYLSGTAARNNT 70
           TLEKF+     ++ NT
Sbjct: 210 TLEKFFTDYCNSKTNT 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,657
Number of Sequences: 438
Number of extensions: 677
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)