Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h07
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1345 + 29478768-29479922                                         29   4.2  
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161...    29   4.2  
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935...    28   7.4  
07_03_0896 + 22373348-22374946                                         28   7.4  
11_06_0516 + 24502645-24504507                                         27   9.8  

>06_03_1345 + 29478768-29479922
          Length = 384

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 466 LGCSYMVECHDWVECH-DVV 410
           LG +Y  + HD VECH DVV
Sbjct: 125 LGATYFTDAHDLVECHPDVV 144


>04_03_1049 +
           22015053-22015083,22015770-22015885,22016013-22016108,
           22016229-22016285,22016468-22016620,22016754-22016838,
           22017097-22017187,22017324-22017488,22017813-22017932,
           22018020-22018104,22018234-22018402,22019055-22019173,
           22019250-22019440,22019746-22019957,22020905-22021500,
           22022538-22022658,22023439-22023868,22024412-22024797,
           22024976-22025071,22025380-22025432,22026915-22027061,
           22027139-22027309,22027880-22027962,22028049-22028247,
           22028668-22028789,22029752-22029818,22029960-22030010,
           22030768-22031001,22031263-22031451,22032455-22032646,
           22032742-22032936
          Length = 1673

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 16  AEVLLDQTDVELRGVIDSDTIYSSEDIAMELESSVPAAAQPQQNDEVLSVSCARSSAEEY 195
           +++L    +VELR   DSD +Y+   +  E + S   +  P+  D  L    A S  +  
Sbjct: 69  SKILCSVVNVELRAEADSDEVYAQIMLQPEADQSELTSLDPELQD--LEKCTAHSFCKTL 126

Query: 196 QSVNTHMH 219
            + +T  H
Sbjct: 127 TASDTSTH 134


>11_04_0470 -
           18092681-18092695,18092725-18092811,18093528-18093593,
           18093696-18093740,18093850-18093903,18093987-18094082,
           18094161-18094241,18095634-18095714,18095798-18095884,
           18095976-18096074,18096644-18096769,18098162-18098248,
           18098321-18098389,18098711-18098806,18099053-18099169,
           18099710-18099790,18099873-18100010,18100307-18100580,
           18100735-18100830,18101612-18101757,18102883-18103141,
           18103434-18103537,18103623-18103748,18103872-18103982,
           18104200-18104304
          Length = 881

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 589 ECHDLVECHDLVECHDWVECHDLVECHDVVECHD-VVECHDVLGCSYMVECHDWVECHDV 413
           +C  L+   D    +   +  D++  H  + C++  V CH V GC  + E +   E  DV
Sbjct: 86  DCSSLIHQDDTDSTNMSNKFDDII--HPRMRCNNGAVPCHQVKGCLLLAEYNILCEAFDV 143

Query: 412 V 410
           V
Sbjct: 144 V 144


>07_03_0896 + 22373348-22374946
          Length = 532

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 275 ATFPCDEAPPQTVRWDPIRCI*VFTLWYSSADDLAQLTLRTSSFCCGCAAAG 120
           A  PC   PP    WD      V + W       A ++L  SSF  GC A G
Sbjct: 83  AASPC-ALPPGAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGCLAGG 133


>11_06_0516 + 24502645-24504507
          Length = 620

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 424 CHDVVECHDL*ERHDVLGCRDMVECHDVVGCHDVVG 317
           CH++ E      R D LG  D+ ECH +VG    +G
Sbjct: 402 CHNLEELGQGITRLDRLGYLDLSECHLLVGMPKGIG 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.125    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,740
Number of Sequences: 37544
Number of extensions: 233812
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)