Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h07
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            26   1.2  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    23   6.3  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -1

Query: 604 CHDVVECHDLVECHDLVECHDWVECHDLVEC-HDVVECHDVVEC 476
           C     C  L  C D   C   +EC     C HD     +VV+C
Sbjct: 734 CKYDTHCFALCHCCDFYACDCKMECPKQCTCYHDQSWSSNVVDC 777



 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -1

Query: 586 CHDLVECHDLVECHDWVECHDLVECHDVVEC-HDVVECHDVLGCS 455
           C     C  L  C D+  C   +EC     C HD     +V+ CS
Sbjct: 734 CKYDTHCFALCHCCDFYACDCKMECPKQCTCYHDQSWSSNVVDCS 778


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 118 VPAAAQPQQNDEVLSVSCARSSAEEYQSVN 207
           +PA A  Q   + L+VSC  S+ +E  ++N
Sbjct: 329 LPAKAAKQLVGQKLTVSCCISNIKEAPAIN 358


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.312    0.125    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,084
Number of Sequences: 2352
Number of extensions: 8858
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)