Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h07
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    35   0.044
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.71 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    29   2.2  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 544  DWVECHDLVECHDVVECHDVVECHDVLGCSYMVECHDWVECHDVVECHDL*ER 386
            D   C D+ EC +   CH   EC ++ G S+  ECH   E   + +C +  ER
Sbjct: 1619 DGFMCTDINECDERHPCHPHAECTNLEG-SFKCECHSGFEGDGIKKCTNPLER 1670



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
 Frame = -1

Query: 628  GTQNDAVECHDVVECHDLVECHDLVECHDW-----VECHDLVECHDVVECHDVVE--CHD 470
            G + D   C D+ EC +   CH   EC +       ECH   E   + +C + +E  C D
Sbjct: 1615 GYRGDGFMCTDINECDERHPCHPHAECTNLEGSFKCECHSGFEGDGIKKCTNPLERSCED 1674

Query: 469  V 467
            V
Sbjct: 1675 V 1675


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
 Frame = -1

Query: 619 NDAVECHDVVECHD-LVECHDL-VECHDWVECH---DLVECHDVVECHDVVECHDVLG-- 461
           ND   CHD+ ECH+   +C  + V     VEC          D   C D+ EC    G  
Sbjct: 370 NDQKLCHDINECHENNGDCSQICVNLAGSVECQCKPGFRLMKDRKTCEDISECSSNNGGC 429

Query: 460 ---CS-----YMVECHDWVE-CHDVVECHDL*E 389
              CS     YM  C    E   D   CHD+ E
Sbjct: 430 EQICSNQEGGYMCSCEPGFELSEDGHSCHDMNE 462


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 16/93 (17%)
 Frame = -1

Query: 619 NDAVECHDVVECHD-LVECHDL-VECHDWVECH---DLVECHDVVECHDVVECHDVLG-- 461
           ND   CHD+ ECH+   +C  + V     VEC          D   C D+ EC    G  
Sbjct: 370 NDQKLCHDINECHENNGDCSQICVNLAGSVECQCKPGFRLMKDRKTCEDISECSSNNGGC 429

Query: 460 ---CS-----YMVECHDWVE-CHDVVECHDL*E 389
              CS     YM  C    E   D   CHD+ E
Sbjct: 430 EQICSNQEGGYMCSCEPGFELSEDGHSCHDMNE 462


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
 Frame = -1

Query: 634 SAGTQNDAVECHDVVECH-DLVECHDLVECHDWV-----ECH-----DLVECHDVVECHD 488
           S G   D   C+DV EC      C D   C + +      CH     +  +C DV EC +
Sbjct: 390 SEGFTGDGFRCYDVDECEIPGAVCRDHSICSNTIGSFECTCHGGYRFEDGKCEDVDECRE 449

Query: 487 VVE-CHDVLGCSYMVECHDWVECHDVVECHDL*ERHDVLGCRDMVECHDVVGC 332
           + + C D    +  +      EC     C D  E      CRD+ EC +   C
Sbjct: 450 LPKICGDPNKGTKCINKDGTFEC----LCKDGYEGDPSSECRDVNECKNPDAC 498



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
 Frame = -1

Query: 607 ECHDVVECHDLVE-CHDLVECHDWVE--------CHDLVECHDVVECHDVVECHDVLGCS 455
           +C DV EC +L + C D  +    +         C D  E     EC DV EC +   C 
Sbjct: 440 KCEDVDECRELPKICGDPNKGTKCINKDGTFECLCKDGYEGDPSSECRDVNECKNPDACG 499

Query: 454 YMVECHDWVECHDVVECHDL*ER-HDVLGCRDMVECHDVVGCHDVVGC 314
              +C +    ++  EC    ER  +   C D  EC  V  CH    C
Sbjct: 500 PNSQCTNTQGGYE-CECLAGFERIAEGAHCTDRDEC-AVEPCHPAAIC 545


>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 7   LIFAEVLLDQTDVELRGVIDSDTIYSSEDIAMELESSVP 123
           ++F+ +L+D  D+ L+G + S   +   D   E+E+S+P
Sbjct: 379 IVFSFLLIDSADMHLKGKLFSHHQHYHHDHHQEIEASIP 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.125    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,301
Number of Sequences: 27780
Number of extensions: 206733
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)