Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20h07
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 49  LRGVIDSDTIYSSEDIAMELESSVPAAAQPQQNDEVLSVSCAR 177
           + GV   +   + +    EL++ +  A+QP      ++ SC R
Sbjct: 61  MAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSVTPSCRR 103


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 433 WVECHDVVECHDL*ERHDVLGCRDMVECHDVVG 335
           W+   +V +C  L +  + LG ++M     VVG
Sbjct: 799 WILRSNVQQCEQLEKAPNTLGLKNMAGVFIVVG 831


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 29  WIRLMWNSGVSLTVIPFTVL 88
           W RL  NSG+  T     VL
Sbjct: 130 WARLRMNSGMFTTAFSIAVL 149


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 29  WIRLMWNSGVSLTVIPFTVL 88
           W RL  NSG+  T     VL
Sbjct: 130 WARLRMNSGMFTTAFSIAVL 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.125    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,063
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)