Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20h05
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.84
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 1.5
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.4
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 3.4
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 26 4.5
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 26 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 26 5.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 7.9
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 7.9
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 7.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 172 SKSSTVVPQQASIAASTGPSQPTH-RASWSYGTHLHCLIAQHSSSVSTHRRLQAALATIT 348
S SST+ +S ++S+ S + ++S S+ + + + SS++++ + A+ +
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 349 QHSSSVSTHR 378
HSSS+S+H+
Sbjct: 398 SHSSSLSSHK 407
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 163 ADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALAT 342
A S SS+ + + +++S+ PS + S + + SSS ST L ++ ++
Sbjct: 201 APTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260
Query: 343 ITQHSSSVST 372
T SSS S+
Sbjct: 261 STASSSSSSS 270
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 315 PQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTT 428
P TSSS+ ++ S S SSS+ + +IS+ ++
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 137 SATTIPAFSQIKASH-QQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRL 313
S T +PA + + + +QSS S P QP + P P A +Y S++ + L
Sbjct: 290 STTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQAADL 349
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 145 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLIAQHSSSVS-THRR 321
+NP+ + S +++ VP+ S + S + T Y H+ +I + S S + RR
Sbjct: 198 NNPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVDKIIQYYVDSFSVSERR 257
Query: 322 LQAALATITQHSSSVS 369
L A + + + S
Sbjct: 258 LVNTRAVVLKEVQAPS 273
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 560 TCIYALYLE--NVVSEIQASVNYLALYDGYPPHH 465
+CI L+L+ + +I+ + L LYD YPP H
Sbjct: 506 SCIKRLHLKLSKGIMDIKVLTHQLMLYDLYPPAH 539
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 172 SKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALATITQ 351
S SS+ P +S +T PS + +S S + + SSS S+ ++ ++ +
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 352 HSSSVST 372
SSS S+
Sbjct: 197 SSSSSSS 203
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 172 SKSSTVVPQQASIAASTGPSQPTHRASW----SYGTHLHCL-IAQHSSSVSTHRRLQAAL 336
S SS+ +S ++S+ S+P+ +S+ S T + + + SSS ST + ++
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272
Query: 337 ATITQHSSSVSTHRKL 384
A + ++S S H L
Sbjct: 273 AALALNASKASNHTSL 288
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 178 SSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALATITQHS 357
+ST+ P+ S ++ST TH +S + T I+ SS+ S + + T++
Sbjct: 45 TSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSD 104
Query: 358 SSV 366
S +
Sbjct: 105 SFI 107
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 149 IPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALP 253
+P S + + Q HS PAS P +SR +LP
Sbjct: 315 LPTLSAVTSDSAQP-HSLPASMPSSQPQSRSESLP 348
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 145 HNPRILADKSKSSTVVPQQASIAASTGPSQPTHRAS 252
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +3
Query: 192 PTASQHRSLNRTIAADSPRFLVLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 371
PT S + + +I L PT+P + S+ P TS+S+ D +++
Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS---PLP 279
Query: 372 SPQTSSSTGT 401
+ TS +T T
Sbjct: 280 TTSTSCTTST 289
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 531 CCKRDSGICQLSC 493
CCK D+G C SC
Sbjct: 398 CCKTDTGCCSSSC 410
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 45 SSFRRISLQTGDLRRDVNTQPS----DSSSAHQELRLPQSPHSRR*KQVINSRPTASQHR 212
+ F ++SL+ +R V T P DSS+ H Q ++ +N+RP+A + R
Sbjct: 1346 NQFSKMSLEP-PVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMPSHNAVNARPSAPERR 1404
Query: 213 SLNRTIAADSPRFLVLRHAPTLPHRAA 293
++++ S + T+P +A+
Sbjct: 1405 DSFGSVSSGSNVSSIEDETSTMPLKAS 1431
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.9
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Frame = +3
Query: 270 PTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISARTTLT-K*HD 446
P+L RA+ S S S+S + S S TSSS+GT + ++ + + +
Sbjct: 46 PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIIS 105
Query: 447 LRSRRGVMWRVAIIQRKIIDRCLNLAYNIFKIKRI-YTSSEQ*HLDRRSTEQYHPLGGRS 623
+ + +V+++ + + IF+ + T + Q + + Y P GG
Sbjct: 106 SSTNNSIHQQVSVVTEYVTIQPTTYVTTIFQYTSLASTIAAQSGIASLVPQTYTPYGGVK 165
Query: 624 SLCRI 638
+L I
Sbjct: 166 ALIGI 170
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 581 PSVYRAISPARWKIFPLSYTYSIIKILHLF 670
P +Y A A+WK+ Y Y + + LF
Sbjct: 2 PIIYSASDAAKWKVAVSPYLYQLSNLKLLF 31
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 273 TLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGT 401
T PH + + SL+SP + S+ + L DSP + ST T
Sbjct: 64 TFPHGSNKQASLESPVSYSNPIPSLTWLSLDGDSPDSLVSTPT 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,407
Number of Sequences: 5004
Number of extensions: 60726
Number of successful extensions: 279
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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