Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20h05
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0086 + 646609-647791,648838-649115,650502-650735 31 0.87
11_01_0060 + 453615-454030,454086-455862 31 1.1
05_05_0057 + 21995018-21997006 31 1.1
01_06_0950 - 33265653-33265802,33265905-33265961,33266046-332661... 29 2.6
12_01_0087 + 692180-693361,695920-696150 29 4.6
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 29 4.6
04_04_0588 - 26412487-26413887 29 4.6
04_03_0822 - 20054832-20055179,20056794-20056847,20057561-200576... 29 4.6
11_06_0743 + 26847652-26849424 28 6.1
10_08_0439 - 17926021-17927133 28 6.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 6.1
04_04_1342 + 32775582-32775796,32776589-32776794,32777356-327774... 28 6.1
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 28 6.1
>11_01_0086 + 646609-647791,648838-649115,650502-650735
Length = 564
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Frame = +3
Query: 78 DLRRDVNTQPSDSSSAHQELRLPQSPHSRR*KQVINSRPTASQHRSLN---RTIAADSPR 248
+L + + SD +EL +S +SR KQ+ +S+P+ + H+ + + + S
Sbjct: 128 ELEAETRKKDSDIMLLRRELDGLKSANSRLNKQISSSKPSVNHHKDYSVVLKKLTTPSAV 187
Query: 249 FLVLRHAPTLPHRAA---FKLSLDSPQTSSSTGDNHAAFK 359
+ + A T H A F L S ++ D H+ +K
Sbjct: 188 LELFKVASTSVHDFAELIFSLISSSDHHCTNNADEHSPYK 227
>11_01_0060 + 453615-454030,454086-455862
Length = 730
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Frame = +1
Query: 7 SVYRANIIRSVEDLPFVVYLSKLVTSDVM*TRNLLIHHQRIKNFGYHNPRILADKSKSST 186
S++ + ++ PFV L+ D+ N ++ + FG+H R + S
Sbjct: 116 SLHGVAVRAGLDSNPFVGSSLLLMNKDLT-CWNAMLEGYVLNGFGHHAIRTVLLMHHSGL 174
Query: 187 VVPQQASIAASTGPSQPTHRASWSYGTHLHCLI--AQHSSSVSTHRRLQAALATITQHSS 360
+ I+A S A W G LHCL+ + S+ S L Q +
Sbjct: 175 APDRYTYISAVKACSIS---AQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKET 231
Query: 361 SVSTHRKLR 387
+ S RK+R
Sbjct: 232 AASVFRKIR 240
>05_05_0057 + 21995018-21997006
Length = 662
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 195 TASQHRSLNRTIAADSPRFLVLRHAPTLPHRAAFKLSLDSPQTSSS 332
++ + RSL RT + P F V P LP AA DSP SS
Sbjct: 427 SSRRRRSLERTSSVRRPSFEVTDAKPVLPAAAAITSVKDSPLIGSS 472
>01_06_0950 -
33265653-33265802,33265905-33265961,33266046-33266111,
33266252-33266317,33266752-33267217,33267313-33267566
Length = 352
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 188 SSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSI 295
S +K A QP+ D RSR L P A TYT +S ++
Sbjct: 305 SESTKDAEQPKPDLRSRGLCLV-PVASTYTVASETV 339
>12_01_0087 + 692180-693361,695920-696150
Length = 470
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +3
Query: 78 DLRRDVNTQPSDSSSAHQELRLPQSPHSRR*KQVINSRPTASQHRSLN---RTIAADSPR 248
+L + + SD +EL +S +SR KQ+ +S+P+ + H+ + + + S
Sbjct: 128 ELEAETRKKDSDIMLLRRELDGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAV 187
Query: 249 FLVLRHAPTLPHRAA---FKLSLDSPQTSSSTGDNHAAFK 359
+ + A T H A F L + D H+ +K
Sbjct: 188 LELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYK 227
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 192 PTASQHRSLNRTIAADSPRFLVLRHAPTLPHRAAFKLSLDSPQTSSSTG 338
P ++QH + AADS +F V R + ++ H K S SSS G
Sbjct: 694 PLSNQHAPIRSKSAADSIQFPVERDSKSVDHFVEKKRSKSKNHGSSSDG 742
>04_04_0588 - 26412487-26413887
Length = 466
Score = 28.7 bits (61), Expect = 4.6
Identities = 26/69 (37%), Positives = 34/69 (49%)
Frame = +2
Query: 26 SSARWKIFLSSYISPNW*PPT*CEHATF*FIISASRTSATTIPAFSQIKASHQQSSHSKP 205
S A ++ SS SP+ PP+ H F F AS T+ P + S QQSS S+P
Sbjct: 82 SDAPVRVISSSPSSPS--PPS-ARHI-FPFAYEASTTTVGGSPRLHPL--SWQQSSMSQP 135
Query: 206 ASQPQQDHR 232
AS QQ +
Sbjct: 136 ASPQQQQQQ 144
>04_03_0822 -
20054832-20055179,20056794-20056847,20057561-20057657,
20057752-20057780
Length = 175
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 179 HQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQ 304
H+ SSH P+S P TA P A ++SSR++ AQ
Sbjct: 142 HRSSSHGHPSSSP--------TAAAAPAAAVQSSSSRTVAAQ 175
>11_06_0743 + 26847652-26849424
Length = 590
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 127 CADDESEGCVFTSRRRSPVWR 65
C+ E+ GC + R +PVWR
Sbjct: 483 CSGGEAAGCGYVEERATPVWR 503
>10_08_0439 - 17926021-17927133
Length = 370
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 107 F*FIISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP 259
F F +AT+ A + AS QSS S A+ P D + L ++ GP
Sbjct: 60 FPFAFPPMMPTATSASAAAAAAASPTQSSSSSAATSPSSDLSAFLNSMLGP 110
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 599 LLGRPTVQMLLFGTCIYALYLENVVSE-IQASVNYLALYDGYPPHHS 462
+LG L FGTC Y L +E+ + + ++ +Y ++D HHS
Sbjct: 507 VLGMDPHDRLYFGTCGYILVVESTAEDSLDSTCHYYGIFD----HHS 549
>04_04_1342 +
32775582-32775796,32776589-32776794,32777356-32777492,
32778758-32778860,32778961-32779079,32779282-32779346,
32779426-32779642,32779713-32779934
Length = 427
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 239 VGCDGPVEAAMLACCGTTVDDLLLSA 162
V GP AA L CC +TVDD ++SA
Sbjct: 38 VALAGPA-AAQLRCCASTVDDGVVSA 62
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 105 PSDSSSAHQELRLPQSPHSRR*KQVINSRPTASQHRSLNRTIA 233
PSD + H+ P+ PH+RR V +R R+L+R A
Sbjct: 1215 PSDPEAGHEGAPCPRRPHARR---VAGAREIGRTARTLHRLAA 1254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,061,820
Number of Sequences: 37544
Number of extensions: 437452
Number of successful extensions: 1600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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