Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20h05
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.26
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.26
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.26
AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical ... 31 1.0
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 30 1.4
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 30 1.4
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 30 1.4
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical... 29 2.4
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical pr... 29 3.2
U46676-1|AAY86202.1| 184|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 4.2
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 4.2
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 4.2
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 29 4.2
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 5.5
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 5.5
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 5.5
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 5.5
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 28 7.3
AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical ... 28 7.3
Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical p... 27 9.6
Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical pr... 27 9.6
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 9.6
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 9.6
AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical ... 27 9.6
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 113 FIISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
F ++ TS +T+P+ S + SS S + P S LT+ P P +S++S
Sbjct: 450 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSP------SSTQS 503
Query: 293 IQAQSRLTADFKQHWRQSRSIQA 361
AQS LT + + S+++
Sbjct: 504 SGAQSTLTTPSPNPSQSTSSLES 526
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 113 FIISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
F ++ TS +T+P+ S + SS S + P S LT+ P P +S++S
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSP------SSTQS 710
Query: 293 IQAQSRLTADFKQHWRQSRSIQA 361
AQS LT + + S+++
Sbjct: 711 SGAQSTLTTPSPNPSQSTSSLES 733
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 113 FIISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
F ++ TS +T+P+ S + SS S + P S LT+ P P +S++S
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSP------SSTQS 710
Query: 293 IQAQSRLTADFKQHWRQSRSIQA 361
AQS LT + + S+++
Sbjct: 711 SGAQSTLTTPSPNPSQSTSSLES 733
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 172 SKSSTVVPQQASIAA-STGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALATIT 348
S STVV AS AA ST PS +S S GT + ++Q S++ ST +T+T
Sbjct: 1746 SAGSTVVSSTASPAASSTAPSSTGTMSSTSSGT-VGSTMSQSSTAASTTSHTG---STVT 1801
Query: 349 QHSSSVSTHR 378
SSS S+++
Sbjct: 1802 LGSSSTSSNQ 1811
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 172 SKSSTVVPQQASIAA-STGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALATIT 348
S STV AS AA ST PS +S S GT + I++ S++ S + + + +
Sbjct: 1497 SAGSTVASSTASPAASSTAPSSTGTMSSTSSGT-VGSTISESSTTASASSQTGSTVTMGS 1555
Query: 349 QHSSSVST 372
+S VST
Sbjct: 1556 SSTSGVST 1563
>AF025453-7|AAK31401.1| 253|Caenorhabditis elegans Hypothetical
protein C08F1.6 protein.
Length = 253
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 677 ITEINVRFLLYCRYTTKGRSSTERVILLGRPTVQMLLFGTCIYALYLENVVSEIQASV 504
I +N RF +YT ST ++ G + MLL G I++LY + I+A +
Sbjct: 61 IVLLNPRFYAREKYTINSFCSTRYLMAAGMICINMLLTGNSIFSLYCSWARAIIEAVI 118
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 ISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP----TARTYTASS 286
+S+ R SA +P Q S+ SH K Q H P P ++ Y ASS
Sbjct: 504 LSSHRESAVDVPVSHQYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASS 563
Query: 287 RS------------IQAQSRLTADFKQHWRQSRSIQAQFRLTAN 382
S +A+ RL ++H S+ +++L +N
Sbjct: 564 TSGYDDDDIYHLSAREARERLRMKNRKHHLHEMSLNEKYQLVSN 607
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 ISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP----TARTYTASS 286
+S+ R SA +P Q S+ SH K Q H P P ++ Y ASS
Sbjct: 363 LSSHRESAVDVPVSHQYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASS 422
Query: 287 RS------------IQAQSRLTADFKQHWRQSRSIQAQFRLTAN 382
S +A+ RL ++H S+ +++L +N
Sbjct: 423 TSGYDDDDIYHLSAREARERLRMKNRKHHLHEMSLNEKYQLVSN 466
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 ISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP----TARTYTASS 286
+S+ R SA +P Q S+ SH K Q H P P ++ Y ASS
Sbjct: 227 LSSHRESAVDVPVSHQYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASS 286
Query: 287 RS------------IQAQSRLTADFKQHWRQSRSIQAQFRLTAN 382
S +A+ RL ++H S+ +++L +N
Sbjct: 287 TSGYDDDDIYHLSAREARERLRMKNRKHHLHEMSLNEKYQLVSN 330
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 ISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP----TARTYTASS 286
+S+ R SA +P Q S+ SH K Q H P P ++ Y ASS
Sbjct: 504 LSSHRESAVDVPVSHQYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASS 563
Query: 287 RS------------IQAQSRLTADFKQHWRQSRSIQAQFRLTAN 382
S +A+ RL ++H S+ +++L +N
Sbjct: 564 TSGYDDDDIYHLSAREARERLRMKNRKHHLHEMSLNEKYQLVSN 607
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 ISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGP----TARTYTASS 286
+S+ R SA +P Q S+ SH K Q H P P ++ Y ASS
Sbjct: 363 LSSHRESAVDVPVSHQYVPSYATESHQKHEQHSQTHHHHHQHQQPSPLSNGSSHGYAASS 422
Query: 287 RS------------IQAQSRLTADFKQHWRQSRSIQAQFRLTAN 382
S +A+ RL ++H S+ +++L +N
Sbjct: 423 TSGYDDDDIYHLSAREARERLRMKNRKHHLHEMSLNEKYQLVSN 466
>AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical
protein C16C4.13 protein.
Length = 495
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 133 NFGYHNPRILADKSKSSTVVPQQASIAASTGPSQPTHRASW 255
+FG+H P + D++K+ VV ++A + A+ G + W
Sbjct: 188 SFGFHLPHVSEDRTKTG-VVEREAKLIAANGKFHSVPKRRW 227
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 29.5 bits (63), Expect = 2.4
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +1
Query: 37 VEDLPFVV--YLSKLVTSDVM*TRNLLIHHQRIKNFGYHNPRILADKSKSSTVVPQ-QAS 207
VED F+ L +L+ ++ T +++ QR+K FG I D + ++ Q +
Sbjct: 705 VEDDDFLTETQLEELMEQIILQT-SVMFRDQRMKKFGLEKEMIKFDGATDEEILLQAEQK 763
Query: 208 IAASTGPSQPTHRASWSYGTHLHCLIAQHSSSVSTHRRLQAALATITQHSSSVSTHRK 381
+A T + T ++ T SSSV TH+ LQA + +++ SV K
Sbjct: 764 LAKITETLKTTSNKLQNFCT-------PSSSSVKTHQPLQAMPSAVSKLEKSVDHDSK 814
>Z81077-9|CAD56582.1| 565|Caenorhabditis elegans Hypothetical
protein F36A2.9b protein.
Length = 565
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = -3
Query: 127 CADDESEGCVF-TSRRRSPVWRDIRR 53
C+ D++EG ++ SR+ S VWRD+++
Sbjct: 321 CSRDQTEGFMYDVSRKWSKVWRDVQK 346
>Z81077-8|CAB03072.2| 528|Caenorhabditis elegans Hypothetical
protein F36A2.9a protein.
Length = 528
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = -3
Query: 127 CADDESEGCVF-TSRRRSPVWRDIRR 53
C+ D++EG ++ SR+ S VWRD+++
Sbjct: 321 CSRDQTEGFMYDVSRKWSKVWRDVQK 346
>U46676-1|AAY86202.1| 184|Caenorhabditis elegans Hypothetical
protein F23G4.1 protein.
Length = 184
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 381 TSSSTGTCKLISARTTLTK*HDLRSRRGVMWRVAIIQRKIIDRCLNLAYNIFK--IKRIY 554
T++S T + K HDL RG+M V I Q+ I DR Y +F +K ++
Sbjct: 25 TTTSLFTDHWVDVEVKNPKGHDLYLHRGLMQWVCINQKDISDRNCIAKYPLFPGWLKSVF 84
Query: 555 T 557
T
Sbjct: 85 T 85
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +3
Query: 192 PTASQHRSLNRTIAADSPRFLVLRHAPTLPHRAAFKLSLDSPQTSSSTGDNHAAFKLSFD 371
PTA + AD P+ + +A K D P+T S+ + +A K D
Sbjct: 37 PTADSEKKAPTKREADPPK----TESADSEKKAPTKRESDKPKTESADSEKNAPAKREAD 92
Query: 372 SPQTSSSTGTCKLISAR 422
P+T S+ K + R
Sbjct: 93 KPKTESADSEKKAPAKR 109
Score = 28.3 bits (60), Expect = 5.5
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Frame = +3
Query: 60 ISLQTGDLRRDVNTQ----PSDSSSAHQELRLPQSPHSRR*K-QVINSRPTASQHRSLNR 224
+ L T D + T+ P + SA E + P S + K + +S A R ++
Sbjct: 34 VKLPTADSEKKAPTKREADPPKTESADSEKKAPTKRESDKPKTESADSEKNAPAKREADK 93
Query: 225 --TIAADSPRFLVLRHAPTLPH--------RAAFKLSLDSPQTSSSTGDNHAAFKLSFDS 374
T +ADS + + P +A K D P+T S+ + A K D
Sbjct: 94 PKTESADSEKKAPAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAKRESDK 153
Query: 375 PQTSSS 392
P+T S+
Sbjct: 154 PKTESA 159
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Frame = +3
Query: 105 PSDSSSAHQELRLPQSPHSRR*K-QVINSRPTASQHRSLNR--TIAADSPRFLVLRHAPT 275
P + SA E + P + + K + +S AS R ++ T +ADS + ++
Sbjct: 353 PPKTESADSEKKAPAKREADKPKTESADSEKKASAKREADKPKTESADSEKKAPVKREAD 412
Query: 276 LPH--------RAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISAR 422
P +A K D P+T S+ + A K D P+T S+ K + R
Sbjct: 413 KPKTESADSEKKAPVKREADPPKTESADSEKKAPTKREADPPKTESADSEKKAPAKR 469
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 285 RAAFKLSLDSPQTSSSTGDNHAAFKLSFDSPQTSSSTGTCKLISAR 422
+A K D P+T S+ + +A K D P+T S+ K + R
Sbjct: 664 KAPAKREADPPKTESADSEKNAPAKREADKPKTESADSEKKASAKR 709
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 134 TSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSI 295
T+ T P ++ A HQ S P+++P+Q H++ ++P P + +A+S I
Sbjct: 312 TTTETAPVYTNPPA-HQPVHRSFPSAEPRQSHKNS-PSVPVPQEQYNSANSEVI 363
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 39 GRSSFRR-ISLQTGDLRRDVNTQPSDSSSAHQELRLPQSPH 158
G + FRR +S + DV P+ SS A E +P+SPH
Sbjct: 2525 GSNDFRRSVSPVDAQEQVDVPHSPAPSSHAESEQPVPESPH 2565
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 39 GRSSFRR-ISLQTGDLRRDVNTQPSDSSSAHQELRLPQSPH 158
G + FRR +S + DV P+ SS A E +P+SPH
Sbjct: 2525 GSNDFRRSVSPVDAQEQVDVPHSPAPSSHAESEQPVPESPH 2565
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 233 SRLTALPGPTARTYTASSRSIQAQSRLTADFKQHWRQSR-SIQAQFRLTANF 385
S LTA TYT + S A +R +A + HW Q+ Q QFR+ + +
Sbjct: 436 STLTATDTWQQETYTFGNASNSATARPSAVYCNHWIQAPVGKQIQFRIDSTY 487
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 173 ASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
+S Q+ S S+P S Q+++RS + + PT +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 173 ASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
+S Q+ S S+P S Q+++RS + + PT +AS+ S
Sbjct: 860 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 899
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 173 ASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
+S Q+ S S+P S Q+++RS + + PT +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 173 ASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRS 292
+S Q+ S S+P S Q+++RS + + PT +AS+ S
Sbjct: 896 SSTQKRSKSQPRSSSQRNYRSPMKLVDLPTTAAASASTNS 935
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 RSSFRRISLQTGDLRRDVNTQPSDSSSAHQELRL---PQSPHSRR*KQVINSRPTASQHR 212
R+S + +T ++D D S + +EL + PQ+P RR +++ TA + R
Sbjct: 805 RTSMEEVVAKTE--KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRR 862
Query: 213 SLNRTIAADSPR 248
+ A++ PR
Sbjct: 863 KGRKLEASEDPR 874
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 RSSFRRISLQTGDLRRDVNTQPSDSSSAHQELRL---PQSPHSRR*KQVINSRPTASQHR 212
R+S + +T ++D D S + +EL + PQ+P RR +++ TA + R
Sbjct: 805 RTSMEEVVAKTE--KKDQPEASEDLSDSREELSVAAGPQAPKKRRRGRMMEDPETARKRR 862
Query: 213 SLNRTIAADSPR 248
+ A++ PR
Sbjct: 863 KGRKLEASEDPR 874
>AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical
protein H10E21.5 protein.
Length = 473
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 116 IISASRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASSRSI 295
+++AS + +P S+ + Q+S +++ +DHR+ L LP P +T AS I
Sbjct: 357 VLNASNAKSFVMPLSSRGVSQGPQASRDFRSARAPRDHRASLHELPRP--QTSAASQGQI 414
>Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical
protein D1086.10a protein.
Length = 177
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 LVLRHAPTLPHRAAFKLSLDSPQTSSSTGDN-HAAFKLSFDSPQTSSSTGTCKLISARTT 428
LVL PTL A + + TS+ N ++ S DSP T+SST T ++ + T+
Sbjct: 10 LVLSATPTLSFTTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQIFTPSTS 69
>Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical
protein B0464.9 protein.
Length = 364
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 194 HSKPASQPQQDHRSRLTALPGPTARTYTASSRSIQAQSRLTADFKQHWRQSRSIQAQF 367
HS+P+S P + ++ L TAR TA+ S+ +Q R ++ + WR + Q+
Sbjct: 208 HSRPSSFPSIE-KAIHWCLSSGTARNPTAARVSMPSQIREVSEHEYTWRIDLTTTEQY 264
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 128 SRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASS 286
S TS T P S Q S + P P + +A PT+ TY+ SS
Sbjct: 1779 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSS 1831
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 128 SRTSATTIPAFSQIKASHQQSSHSKPASQPQQDHRSRLTALPGPTARTYTASS 286
S TS T P S Q S + P P + +A PT+ TY+ SS
Sbjct: 1786 SPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSS 1838
>AL032625-2|CAB63351.1| 138|Caenorhabditis elegans Hypothetical
protein Y37H9A.6 protein.
Length = 138
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 530 VVSEIQASVNYLALYDGYPPHH-SPPRPEV 444
+ ++ + +L L YPPHH +PP+ V
Sbjct: 10 IYRKLAGKIEFLLLQASYPPHHWTPPKGHV 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,142
Number of Sequences: 27780
Number of extensions: 364600
Number of successful extensions: 1392
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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