Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20g24
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    23   4.1  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    23   4.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    23   5.4  
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    23   5.4  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    22   9.5  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 122 TDTKQLISHHYYAFKPKETLKRQNKTNHTASLLAFPLKR 6
           T    LI   +Y F P E    + +    A+ + FPLK+
Sbjct: 247 TIAPSLIMPLFYKFTPLENGSLRTQIEELAASINFPLKK 285


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  WLINCLVSVKLHKCWKIKQKK 159
           W   CL  ++  + WKI+ +K
Sbjct: 432 WGSICLAHIQFRRAWKIQNRK 452


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 122 TDTKQLISHHYYAFKPKETLKRQNK 48
           TDT Q+IS     F+    L++QN+
Sbjct: 547 TDTDQIISSRLVVFRNIRELQQQNQ 571


>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 95  HYYAFKPKETLKRQNKTNHTASLLAFPLK 9
           H   + PK  LK Q+++NH+  +   P+K
Sbjct: 140 HASPYLPKFELKSQSQSNHSNVVKNQPIK 168


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 152 CLIFQHLCNFTDTK-QLISHHYYAFKPK 72
           C++F+H     DT+ Q++   Y+   P+
Sbjct: 165 CVVFKHKQTSQDTRFQILEFFYFYLSPE 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,742
Number of Sequences: 5004
Number of extensions: 8413
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)