Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20g24
         (161 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 84  CVIMVAY*LFSICEITQMLEN*TKKK 161
           C++ +AY  FS+  ITQ+  N T +K
Sbjct: 552 CLVYIAYLAFSVYGITQLNINLTAQK 577


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 84  CVIMVAY*LFSICEITQMLEN*TKKK 161
           C++ +AY  FS+  ITQ+  N T +K
Sbjct: 552 CLVYIAYLAFSVYGITQLNINLTAQK 577


>Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical
           protein F58E6.4 protein.
          Length = 130

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 161 FFFCLIFQHLCNF 123
           F+FC+ F++ CNF
Sbjct: 100 FYFCVCFENNCNF 112


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 80  KPKETLKRQNKTNHTASLLAFPLKRT 3
           +P ETL+++ K  + A  +  P+KRT
Sbjct: 663 EPAETLEKEIKPENVAENMRSPVKRT 688


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,736
Number of Sequences: 27780
Number of extensions: 48455
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)