Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20g24
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   1.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   3.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    19   4.2  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    19   5.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    18   9.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    18   9.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    18   9.8  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 128 NFTDTKQLISHHYYAFKPKETLKRQ 54
           N    K+    HY AFK    LK+Q
Sbjct: 454 NLAAQKREYYSHYVAFKSLSYLKKQ 478


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 128 NFTDTKQLISHHYYAFKP 75
           NF   K   + HYYAF P
Sbjct: 464 NFLPEKTA-NRHYYAFVP 480


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 143 FQHLCNFTDTKQLISHHYYAFKP 75
           F+H+   T   + IS + Y F+P
Sbjct: 149 FRHIGPSTPFPRFISPNAYRFRP 171


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 FQHLCNFTDTKQLISHHYYAFKP 75
           F+H+   T   Q I  + Y F+P
Sbjct: 150 FRHIGPSTPFPQFIPPNAYKFRP 172


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 85 HLSLKKH*RDKIKQITQLH 29
          + SLK+H +DK +Q   L+
Sbjct: 18 YYSLKRHFQDKHEQSDTLY 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/24 (20%), Positives = 14/24 (58%)
 Frame = -1

Query: 161 FFFCLIFQHLCNFTDTKQLISHHY 90
           +F C++F    +   T  ++++H+
Sbjct: 297 YFNCIMFMVASSVVSTILILNYHH 320


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 38  CDLFYFVSLVFL 73
           C LF+ + +VF+
Sbjct: 210 CILFFLIPMVFI 221


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 FQHLCNFTDTKQLISHHYYAFKP 75
           F+H+   T   + I  + Y F+P
Sbjct: 145 FRHIGPLTPFPRFIPPNAYRFRP 167


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 143 FQHLCNFTDTKQLISHHYYAFKP 75
           F+H+   T   + I  + Y F+P
Sbjct: 386 FRHIGPLTPFPRFIPPNAYRFRP 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,231
Number of Sequences: 438
Number of extensions: 620
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)