Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20g16
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 177 1e-45
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 177 1e-45
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 4.7
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 4.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 8.1
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.1
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 8.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.1
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 177 bits (430), Expect = 1e-45
Identities = 86/157 (54%), Positives = 101/157 (64%)
Frame = +3
Query: 87 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 266
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 446
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 447 VAQDSSYKYFEVILVDPSHKAIRXDPXINWIVNAVHK 557
V QD++YK+FEVILVDPSHKAIR DP INWIVN VHK
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHK 157
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 177 bits (430), Expect = 1e-45
Identities = 86/157 (54%), Positives = 101/157 (64%)
Frame = +3
Query: 87 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 266
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 446
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 447 VAQDSSYKYFEVILVDPSHKAIRXDPXINWIVNAVHK 557
V QD++YK+FEVILVDPSHKAIR DP INWIVN VHK
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHK 157
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 448 LHKILHTSISRLSSWTRHTRPFVXILXSTGS*MLYI 555
L+KIL S ++ ++T H P V ++ S LYI
Sbjct: 47 LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYI 82
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 9 VNSVHSLVFFYGLPVGHARRLPQAAK 86
+NS++ L FY +P G +LP + K
Sbjct: 97 INSINMLYAFYYMPSGDEEKLPSSWK 122
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 453 QDSSYKYFEVILVDPSHKAIRXDPXINWIVNAVHK 557
+ S KY E P H + P WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 153 LRVRVWQYRQLTRMHRAPRPTRPD 224
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 410 SLRWSPCVELLLGCTRFF 463
SL+ P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 386 GLKVARGLQLVDTMALGLAISGTLSNW 306
GL VA G Q DT+ LG+ I +S++
Sbjct: 93 GLTVALGPQFPDTLVLGMEIRMQVSDY 119
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 498 SHKAIRXDPXINWIVNAVHKXSRDAWSDF 584
S K I+ I+W V+ H D W++F
Sbjct: 244 SRKPIKIGIPIDWNVSETHPNVLDKWNEF 272
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 192 YESTDGTAIPSHATKNA*HRSVFSYTTPEYICRHPS*QPVADVSRVPQVNRKRKLNCAQS 13
Y S + ++ H T+ R+ S T P Y R + P + R+P V LN Q+
Sbjct: 148 YSSANASSASLHPTEQ---RTTSSPTIPSYANRTHTDSPTSLSHRLPNVPDTNALNTVQA 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,809
Number of Sequences: 5004
Number of extensions: 49426
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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