Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20g16
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   170   8e-43
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   168   3e-42
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     34   0.001
05_02_0037 + 5883285-5884292                                           31   0.51 
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     30   1.2  
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    27   8.3  
01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37...    27   8.3  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  170 bits (413), Expect = 8e-43
 Identities = 81/157 (51%), Positives = 98/157 (62%)
 Frame = +3

Query: 87  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 266
           MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 267 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 446
                               YGKPK  G+ QLK  RN +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 447 VAQDSSYKYFEVILVDPSHKAIRXDPXINWIVNAVHK 557
           V +DS+YKYFE+ILVD +H AIR DP INW+   VHK
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHK 157


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  168 bits (408), Expect = 3e-42
 Identities = 80/156 (51%), Positives = 97/156 (62%)
 Frame = +3

Query: 90  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 269
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 270 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 449
                              YGKPK  G+ QLK  RN +S+AEE            +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 450 AQDSSYKYFEVILVDPSHKAIRXDPXINWIVNAVHK 557
            +DS+YKYFE+ILVD +H AIR DP INW+   VHK
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHK 262


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 34.3 bits (75), Expect(2) = 0.001
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 474 FEVILVDPSHKAIRXDPXINWIVNAVHKXSRDAWS 578
           FE+ILVD +H AIR DP     + A  +  R  WS
Sbjct: 299 FEIILVDVAHSAIRDDPKDQLALQACAQARRAPWS 333



 Score = 25.0 bits (52), Expect(2) = 0.001
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 327 YGKPKSHGVNQLKPTRN 377
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 170 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 322
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 386 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 270
           G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 293 WPQASSC*G-CHLWQAQEPWCQPVEAH 370
           WPQ       CHL Q +EPW   ++AH
Sbjct: 46  WPQDQRWYQHCHLQQEEEPWRCQIKAH 72


>01_01_0049 -
           373980-374148,374407-374451,375003-375149,375647-375768,
           375938-376042,376123-376234,376314-376381,376617-376766,
           377471-377533,377616-377741,377841-377963,378206-378387,
           379398-379488
          Length = 500

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 12  NSVHSLVF--FYGLPVGHARRLPQAAKMGAYR--YIQELYRKKLSDVMR 146
           +S HS +F    GLP G  RR+   A  GA+R   + +L   K++D ++
Sbjct: 237 DSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVDKLKEVKVADALK 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,474
Number of Sequences: 37544
Number of extensions: 363633
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)