Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f22
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    24   1.1  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    24   1.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.4  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   5.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   5.8  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 NAMVFDETNKNLKFIHNSISICLNRCINL 333
           N+++F    K L  + + +  CL+ C NL
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCFNL 290


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 247 NAMVFDETNKNLKFIHNSISICLNRCINL 333
           N+++F    K L  + + +  CL+ C NL
Sbjct: 262 NSVLFQNVYKPLPIVLSIVKNCLSYCFNL 290


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 294 QQHQHMFKSLYKFNYN 341
           +Q +H F  +YK+ YN
Sbjct: 33  RQERHSFYKIYKYTYN 48


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 276 KFKIYSQQHQHMFKSLYKFNYNKTLCTIIWV 368
           +FK+   + + M  SL   NY++  C I +V
Sbjct: 34  QFKVLGHRQRAMEISLTTGNYSRLACEIQFV 64


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 390 YINVVK*KPILLYIMFYCN*IYTAI 316
           Y+  V+ +PIL  I  YC  + T I
Sbjct: 145 YVFFVENEPILYLIFSYCPIVTTGI 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,845
Number of Sequences: 336
Number of extensions: 2537
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)