Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f22
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    32   0.26 
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    30   1.4  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    30   1.4  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical p...    27   9.7  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 97  RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 225
           R Q D+L +  +  Q L +D  DY ++ LN P K FD L +++
Sbjct: 275 RCQGDILKITEKFQQILANDLHDYYVDVLNMP-KYFDRLAKLM 316


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 67  TSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDF-LDEMLTKKLIE 243
           TS+  + +++ +   +     E  Q    +  + +IE+LN+  K     L+E  TKK  E
Sbjct: 77  TSIKDLLEILEIIQKIFKKQDEFQQV--QENQNKSIENLNSELKTVKAELNE--TKKQQE 132

Query: 244 SNAMVFDETNKNLKFIHNSI 303
           S   + D ++KNLK I  SI
Sbjct: 133 SQEKLIDNSDKNLKLILESI 152


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 60  HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 161
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 514 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 547


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 60  HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 161
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 511 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 544


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 217 HLKNQTVCPARLRILWCNRACRCLDIGPLRASCPTRR 107
           H     +C  R  + +C + CR LD     A C  +R
Sbjct: 304 HSSTARMCVGRPGLAYCRQKCRALDASESSARCLRQR 340


>Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical
           protein T26E4.16 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 330 FNYNKTLCTIIWVFILQHLCI*NYNCYYTDNSDYRRCRLCR 452
           FNY    C    +F  + L + N N  +      R+CR CR
Sbjct: 19  FNYGVLCCDACKMFFRRTLFVKNINSCHRLGECIRKCRSCR 59


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 414 TDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLIIFLSYNAIIINSL 578
           TDN     C    +D T++   I   + ++S+  VLL S  + F+S  A  I  L
Sbjct: 225 TDNVTQNVCASQEIDLTKQFETIAFDVLTRSMSVVLLHSIKVNFVSVEAYYIQPL 279


>AF016448-6|AAB65951.1|  217|Caenorhabditis elegans Hypothetical
           protein F41E6.9 protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 43  SFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNS--DTPDYTIESLNA 189
           + QK     ++D +  L     D+LDM  E+ + ++   DTPD     L A
Sbjct: 114 TMQKEYKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQYDTPDIDEADLEA 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,047
Number of Sequences: 27780
Number of extensions: 221573
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)