Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f20
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    31   0.99 
01_06_0281 + 28155039-28155160,28155243-28155333,28155822-281558...    29   5.3  
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975...    28   7.0  
02_04_0073 - 19471254-19472681                                         28   7.0  

>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 745 QXQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESG 638
           Q QP+   QS P     SQPT F  S+   +G ++G
Sbjct: 850 QTQPSAASQSLPPGHPSSQPTPFNSSEIDSTGQQTG 885


>01_06_0281 +
           28155039-28155160,28155243-28155333,28155822-28155878,
           28156174-28156221,28156399-28156449,28156529-28156572,
           28156673-28156736,28156927-28157013,28157304-28157395,
           28157489-28157539,28158592-28158641,28158717-28158781,
           28158876-28159019,28159156-28159197
          Length = 335

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 189 TTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 94
           T +K+ K+V  ++ TS   +H VCF+ +  ++
Sbjct: 249 TIMKEYKSVQDAYKTSDKYSHTVCFRAFEHLL 280


>03_02_0602 +
           9759055-9759223,9759305-9759455,9759548-9759593,
           9759974-9760033,9760519-9760555,9761268-9761347,
           9761413-9761516,9761613-9761673,9762962-9763019,
           9763866-9763918,9764357-9765320,9766131-9766185,
           9767223-9768786
          Length = 1133

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 402 NLAAEPSAQLSPTQCYSGTAEKHDPH 479
           N+AA  +AQ+ PTQC  G      PH
Sbjct: 600 NVAAVKAAQIVPTQCTDGLRSFGSPH 625


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 85  IVHNYPDITFETHSMVTIN 141
           I+H Y D+ FE HS + +N
Sbjct: 272 IIHGYQDLLFEKHSWIALN 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,494
Number of Sequences: 37544
Number of extensions: 251945
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)