Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20f20
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 35 0.054
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 32 0.51
Z68751-4|CAA92974.1| 425|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.6
Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical p... 29 4.7
Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical p... 29 4.7
Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical p... 29 4.7
U70851-2|AAM97996.1| 671|Caenorhabditis elegans Osmotic avoidan... 29 4.7
U70851-1|AAM97997.1| 699|Caenorhabditis elegans Osmotic avoidan... 29 4.7
AF149285-1|AAF99084.1| 672|Caenorhabditis elegans Osm-3 protein. 29 4.7
D38632-1|BAA07612.1| 672|Caenorhabditis elegans OSM-3 (kinesin ... 28 6.2
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 28 6.2
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 8.2
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 8.2
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 204 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 64
C ICF DT DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 6 CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 204 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 70
C IC +DTK +DC H +C +C RI +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 204 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFC 64
C IC K+ N+D + I C H++C C ++I ++ Y FC
Sbjct: 6 CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFC 50
>Z68751-4|CAA92974.1| 425|Caenorhabditis elegans Hypothetical
protein T05E11.4 protein.
Length = 425
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -1
Query: 552 YHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASET 430
YH Q ++S DD +++DD I+S A +++QN I +++
Sbjct: 386 YHEDSQCSLSTDDDREAKDDDYIDS--DAEEKFQNMIDNDS 424
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 204 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 70
C +C +D N+D S + C H++C C V++I NS C
Sbjct: 6 CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical
protein Y41E3.7c protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 745 QXQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 644
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 87 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 120
>Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical
protein Y41E3.7b protein.
Length = 396
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 745 QXQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 644
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 145 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 178
>Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical
protein Y41E3.7a protein.
Length = 435
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 745 QXQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 644
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 184 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 217
>U70851-2|AAM97996.1| 671|Caenorhabditis elegans Osmotic avoidance
abnormal protein3, isoform a protein.
Length = 671
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 555 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 409
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488
>U70851-1|AAM97997.1| 699|Caenorhabditis elegans Osmotic avoidance
abnormal protein3, isoform b protein.
Length = 699
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 555 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 409
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 468 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 516
>AF149285-1|AAF99084.1| 672|Caenorhabditis elegans Osm-3 protein.
Length = 672
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 555 TYHVHGQVNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 409
T + +N+ DDPLL T E +D + Q + + +R ++
Sbjct: 440 TQKLAAALNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 488
>D38632-1|BAA07612.1| 672|Caenorhabditis elegans OSM-3 (kinesin
protein) protein.
Length = 672
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 534 VNISNDDPLLSQEDDTIESVDRASQQYQNSIASETAAQRALQ 409
+N+ DDPLL T E +D + Q + + +R ++
Sbjct: 449 LNVHKDDPLLQVYSTTQEKLDAVTSQLEKEVKKSKGYEREIE 490
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 204 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 64
C IC TL+ + VD+ + C H++C C + + N C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 207 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 94
SC IC+ K + F C H +C +C +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 480 SVDRASQQYQNSIASETAAQRALQ 409
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 480 SVDRASQQYQNSIASETAAQRALQ 409
S+D+A Q++ N + S+ QRA Q
Sbjct: 293 SIDKARQEFTNGVMSDAGVQRATQ 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,798
Number of Sequences: 27780
Number of extensions: 236728
Number of successful extensions: 835
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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