Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f19
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.80 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.6  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   5.6  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   9.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.8  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.8  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 79  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 186
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +3

Query: 204 VATVDVPVIRQRTRLVYNKKRCRGKTNSGSCVITESYVSIEKSQSCKTGWIYEAKTDSCV 383
           V + +   +R  T + Y    C+    +G C   ++   +   +  K GW  + + DS  
Sbjct: 169 VLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQ 228

Query: 384 PKCTSG 401
            K   G
Sbjct: 229 EKYKKG 234


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 436 HTSGASQVPFTHPLVHFGTQLSVFA-SYIQPVLHD*LFSMLTYDSV 302
           ++  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 18  NSQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 285 SGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPK 389
           +G C IT  + + + + SC   W  + K DS V K
Sbjct: 214 AGDCKITLVHPNEQPNSSCLEYWGQDFKEDSLVQK 248


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 237 RTRLVYNKKRCRGKTNSGS 293
           +T L    KRC GKTN GS
Sbjct: 407 KTSLFIALKRCFGKTNDGS 425


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 315 VSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPE 431
           +S+ +     TG IYEA T++  PK  S         PE
Sbjct: 330 MSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPE 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,654
Number of Sequences: 5004
Number of extensions: 48159
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)