Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20f19
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0507 + 25017031-25017333,25017397-25017855 32 0.36
12_01_0018 + 132654-133304,133726-134265,134357-134436,134673-13... 30 1.4
09_02_0045 + 3479503-3480285 30 1.4
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 30 1.4
11_01_0019 + 135610-136296,136736-137275,137367-137518,137683-13... 29 2.5
04_01_0377 - 4970034-4970687 29 2.5
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 29 3.3
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 29 4.4
07_03_1736 + 29130118-29130294,29130649-29130703,29130837-291310... 24 5.0
04_04_1335 - 32730516-32730570,32730655-32731154,32731235-327314... 28 5.8
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 7.7
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 28 7.7
07_03_1393 - 26245105-26246862 28 7.7
06_01_0005 - 125809-126339 28 7.7
>03_05_0507 + 25017031-25017333,25017397-25017855
Length = 253
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 323 NAHV*FGYNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 198
NA Y+ARAA S+ A L V +A+P DR+ H G+ F
Sbjct: 117 NAQAYHAYHARAAASVRVAVHDALFVRDLAAIPEDRWAHDGDYF 160
>12_01_0018 +
132654-133304,133726-134265,134357-134436,134673-134949
Length = 515
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 302 YNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 198
Y+ARAA S+ AA L +A+P DR+ H G+ F
Sbjct: 81 YHARAAASVRVAAHDALFARDLAAIPEDRWAHDGDYF 117
>09_02_0045 + 3479503-3480285
Length = 260
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +3
Query: 480 EPTCS---PACDSYSSCTDFNVCTCVNNTIALNGSQ 578
EP+CS P+ + C D ++ C N+IAL+G Q
Sbjct: 186 EPSCSKIVPSNEPCVRCKDIDINACATNSIALSGLQ 221
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 444 PEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTI-ALNGSQCAP-VCPDGYY 608
P P+ RR C P CS A +SS ++C + A+ CA CP YY
Sbjct: 141 PPPIDSRRISCASPLCSAA---HSSAPTSDLCAAARCPLDAIETDSCASHACPPLYY 194
>11_01_0019 +
135610-136296,136736-137275,137367-137518,137683-137959
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 302 YNARAAVSL--AATSFLIVDQTSALPYDRYVHGGNSF 198
Y+ARAA S+ AA + L +A+P D++ H G+ F
Sbjct: 93 YHARAAASVRVAAHNALFARDLAAIPEDKWAHDGDYF 129
>04_01_0377 - 4970034-4970687
Length = 217
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +3
Query: 459 LRRGHCVEPTCSPACDSYSSC-TDFNVCTCVNNTIALNGSQC---APVCPDGYYNDPVEC 626
L R +C S AC S C + TC NN C + C G N P
Sbjct: 44 LGRDYCGTGCQSGACCSSQRCGSQGGGATCSNNQCCSQYGYCGFGSEYCGSGCQNGPCRA 103
Query: 627 SPRCERCVNG 656
+C R NG
Sbjct: 104 DIKCGRNANG 113
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 350 LDIRGEDRQLCTEMHERVRERN--LRGARGVHLSRASGPQTRTL 475
LD++GED C + E + E + LR RG L R + Q + L
Sbjct: 23 LDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQEL 66
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 335 IMQDWLDIRGEDRQLCTEMHERVRERNLRGARGVHLSRASGPQTRTLRGAH 487
I+ DW+D ++R + +MH E+ L+G+ GV L+ + +TR + H
Sbjct: 133 IVTDWVDY--QNRLVRGDMHS---EKPLKGSGGVSLANGNTTETRLRKRCH 178
>07_03_1736 +
29130118-29130294,29130649-29130703,29130837-29131048,
29131201-29131322,29131406-29131559,29131849-29131918,
29132007-29132152,29132238-29132310,29132366-29132418,
29132514-29132658,29132945-29133063,29133171-29133242,
29133336-29133439,29133695-29133751,29133861-29134059,
29134169-29134312,29134418-29134537
Length = 673
Score = 23.8 bits (49), Expect(2) = 5.0
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 299 NARAAVSLAATSFLIVDQTSALPYDRYV-HG 210
N+R ++ + + + +DQ S +P D Y+ HG
Sbjct: 213 NSRLQLTTSKSGVIWLDQVSVMPSDTYMGHG 243
Score = 23.0 bits (47), Expect(2) = 5.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 101 FRRDRLQSLSQLKPQF 54
FR+D L+ LKPQF
Sbjct: 244 FRKDLASMLANLKPQF 259
>04_04_1335 -
32730516-32730570,32730655-32731154,32731235-32731416,
32732673-32732779,32733364-32733395,32733499-32733542,
32733816-32733977,32734356-32734755
Length = 493
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 90 IASEREHRAMLCGNVLSVLLFVIGERSLFCDAIKDGK 200
+A + HR L +VLSV +F + DAIK GK
Sbjct: 421 VADQVGHRVRLSPSVLSVFVFSSAAIAFTYDAIKSGK 457
>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 27.9 bits (59), Expect = 7.7
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = -3
Query: 422 LASSVHAPARAFRYTAVGLRLVYPASLA*LTLLNAHV*FGYNARAAVSLA--ATSFLIVD 249
LA + H F A L + PA LA L L NARAAV+ A A ++
Sbjct: 1258 LAVARHGALDVFYSNAGVLGSIAPAPLASLDLGEFDRVMAVNARAAVAAAKHAARAMVPR 1317
Query: 248 QTSALPYDRYVHG--GNSFPIFYGITK 174
++ + + V G G + P YG++K
Sbjct: 1318 RSGCVLFTGSVSGVVGGTGPTSYGVSK 1344
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 468 GHCVEPTCSPACDSYSSCTDFNVCTCVNN 554
G V P +P+ +S+ CTD+ V +NN
Sbjct: 350 GLVVSPPVTPSIESFDPCTDYYVEAYLNN 378
>07_03_1393 - 26245105-26246862
Length = 585
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 372 DSCVPKCTSGCVNGTCEAPEVCTCPEPLVL 461
D T+ VNGTC+ C +P VL
Sbjct: 127 DQATATATAAAVNGTCDPDAPLNCSDPRVL 156
>06_01_0005 - 125809-126339
Length = 176
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 182 CHKRWERSCHRGRTG 226
CH+RW R RGR G
Sbjct: 156 CHRRWRRRARRGRGG 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,283
Number of Sequences: 37544
Number of extensions: 347651
Number of successful extensions: 1058
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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