Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f16
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.16 
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    30   2.0  
01_06_1034 + 33962813-33963802                                         29   3.5  
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     29   4.7  
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     28   8.1  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 433 AKFYNVIDFCKGLE-IAHDDILDCNWD 510
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 682 SPSVEGAATRCFCCQNLTASKFSTTPAWSRTMRPTS*DRVWISACE 545
           +P    AA RCF  Q  T+S   ++P WS   RP   + + +  C+
Sbjct: 43  APRAAAAAARCFATQPATSSLRDSSPNWSN--RPPK-ETILLDGCD 85


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 562 WISACEK*FRLNGKLDRCPNCN 497
           W  AC +  R++G+   CPNCN
Sbjct: 8   WCYACRRPIRVSGQDITCPNCN 29


>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 505 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR 630
           +D D +  LNE++  ++K K+DL     L+  K  L ++  R
Sbjct: 660 YDQDALERLNELVVKREKEKQDLERELELYRRKVHLFEVKER 701


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 30  PYVCTFRICKIQTWTRSRCSIGRTW 104
           PY  T  + K     R+ CSIGR W
Sbjct: 55  PYAHTIELTKTDISDRNLCSIGRVW 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,455
Number of Sequences: 37544
Number of extensions: 304063
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)