Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f09
         (500 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   4.7  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 272 KLSRRQVDFLIHALLN 319
           KL+ R +DFL H L N
Sbjct: 138 KLAARYIDFLYHVLSN 153


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 194  VINMFLNDEIENDKIYKLVETVDSSNKLSRRQ 289
            +IN+  + E+ N ++  + +T+D S  +SRR+
Sbjct: 1134 LINIADSLEMLNKRLDHIEKTIDPSGHISRRR 1165



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49   VQFNEKLFHRTGQIDNV 99
            +QF   LFHR G I ++
Sbjct: 1340 IQFVAMLFHRFGTIAHI 1356


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 194  VINMFLNDEIENDKIYKLVETVDSSNKLSRRQ 289
            +IN+  + E+ N ++  + +T+D S  +SRR+
Sbjct: 1134 LINIADSLEMLNKRLDHIEKTIDPSGHISRRR 1165



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49   VQFNEKLFHRTGQIDNV 99
            +QF   LFHR G I ++
Sbjct: 1340 IQFVAMLFHRFGTIAHI 1356


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 194  VINMFLNDEIENDKIYKLVETVDSSNKLSRRQ 289
            +IN+  + E+ N ++  + +T+D S  +SRR+
Sbjct: 1134 LINIADSLEMLNKRLDHIEKTIDPSGHISRRR 1165



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49   VQFNEKLFHRTGQIDNV 99
            +QF   LFHR G I ++
Sbjct: 1340 IQFVAMLFHRFGTIAHI 1356


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 194  VINMFLNDEIENDKIYKLVETVDSSNKLSRRQ 289
            +IN+  + E+ N ++  + +T+D S  +SRR+
Sbjct: 1134 LINIADSLEMLNKRLDHIEKTIDPSGHISRRR 1165



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 49   VQFNEKLFHRTGQIDNV 99
            +QF   LFHR G I ++
Sbjct: 1340 IQFVAMLFHRFGTIAHI 1356


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 480 QIYFHFYLSYY 448
           Q+YF FY +Y+
Sbjct: 151 QLYFQFYYTYF 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,616
Number of Sequences: 336
Number of extensions: 1788
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)