Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f07
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.37 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    29   0.49 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   0.65 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.0  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   3.5  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 87  HVYSRPAVY*PAVFGSKSKRNRLRRNH*IGQRRHHIQAPCR*QKSHRHSKRHY 245
           H  SR     PA    + ++ R R NH  G  R H        + HRHS  +Y
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNY 173


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 252 HTRNGVLNDDA---ISVNGKALECGVGVVRFNGSAVNGSVWIYCQK 124
           HT NG ++D+     S  G+   C  G+V  +  A +G ++I C +
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQ 73


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 33  CNSSLYG*LLSSADTHHGHVYS 98
           C   LYG L+ S D H+GH Y+
Sbjct: 446 CEYVLYGVLVHSGDLHNGHYYA 467


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 295  TLSDDCFMREIMEKNNYNTYYKMYDRKLTYVAL 393
            T++D  F++ I+ K  YN YY +YD   T V L
Sbjct: 1615 TVNDFLFLQTILRKI-YNFYYALYDVPTTDVEL 1646


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 157 GGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEK 336
           GG +  + A    +++  DRN  V   A+  + +C+  CG  +  +  S + F+ E++ +
Sbjct: 39  GGNLPREAAFAIVRKVN-DRNPTVAYLALNLLDICVKNCGYAFRLQIASKE-FLNELVRR 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,018
Number of Sequences: 5004
Number of extensions: 47209
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)