Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f07
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           32   0.38 
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    31   0.66 
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   3.5  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    28   6.2  
03_01_0545 - 4086692-4087591                                           28   6.2  
01_05_0285 - 20382305-20382563,20383315-20384504                       28   6.2  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    27   8.2  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 28  ALVTLASMADCSALLTHITGTSIPGRLFINRRFLAVNPNGTVYGGTIESDNADTTFKRLA 207
           +L  L S+        H++G SIP  +F     +A N N  +  GT   DNA T+ KR  
Sbjct: 560 SLAKLESLTQLVLSYNHLSG-SIP--IFRQHVDIATNGNPDLTNGTRNYDNAPTSGKRRT 616

Query: 208 VDRNRIVIQNAIT--CVYLCI 264
              N ++I  AIT   V LC+
Sbjct: 617 --HNTVIIVVAITGALVGLCL 635


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 536  TIVSFFILGHDVYIGKLKRFNKVMAYTLNLPSLRPFEIC 420
            T   + +L  DVY   +  F K  A    +PS+ PFE+C
Sbjct: 1598 TAAPYTVLRRDVYRPFVAAFAKATARITRMPSVAPFELC 1636


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 109 FINRRFLAVNPNGTVYGGTIESDN-ADTTFK--RLAVDRNR 222
           F  R  +    NGTVY GTI  DN A    K  RLA +R +
Sbjct: 406 FDERNVIGKGGNGTVYRGTIAKDNGAVVAIKRCRLATERQK 446


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 140 QTEPFTAEPLNRTTPTPHSSA----LPLTEIASSFKTPLRVCTC 259
           + +P    P N+T+PT HS A    +P+++I+ +     +   C
Sbjct: 38  ELDPQVGSPQNKTSPTKHSLAEPMNMPVSKISKTLTNDFQAAKC 81


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 440 LRPFEICSFRGVPS 399
           LRPFE+C FR VP+
Sbjct: 255 LRPFEVCGFRVVPT 268


>01_05_0285 - 20382305-20382563,20383315-20384504
          Length = 482

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +1

Query: 37  TLASMADCSALLTHITGTSIPGRLFINRRFLAVNPNGTVYGGTIESDNADTTFKRLAVDR 216
           T+A M  C+A +   +G +     F+ +R L V    T  GG +    A  T  RL    
Sbjct: 369 TVAVMVACAAFVQAASGLTFGIVPFVCKRSLGVVSGMTASGGAV---GAIVT-NRLFFSG 424

Query: 217 NRIVIQNAITC 249
           +R  ++ AI+C
Sbjct: 425 SRYTVEEAISC 435


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -1

Query: 288 SVQLATPVYAQVHTRNGVLNDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKP 121
           S QL+T +++      GVL    + VNG   +   G+V + G  V+ ++ +Y  +P
Sbjct: 28  SRQLSTTLFSYEDRFEGVLLAHEVVVNGDRAKILNGLVPYFGVPVHANLLLYSPQP 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,133
Number of Sequences: 37544
Number of extensions: 299424
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)