Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f06
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    28   0.034
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   2.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.9  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   5.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.0  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 0.034
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 264 SSNAFRFEGWGSRCNYTETLELVSQGGWRV 353
           + N+ ++ G      Y E +EL  +GGW+V
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 270 NAFRFEGWGSRCNYTETLELVSQGGW 347
           +A R+ G      Y E +E  + GGW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 34  CIRVEAMHRCSNPAGGY 84
           C  + A H+C+ P G Y
Sbjct: 353 CTTIHAGHKCTCPEGFY 369


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 386 WLLEPIDIYNVDAPPTLRYK 327
           WL  P  + N   P +LR+K
Sbjct: 7   WLTPPHSLGNTVTPVSLRFK 26


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 VHISLEKLVPACGIR 64
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 VHISLEKLVPACGIR 64
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 VHISLEKLVPACGIR 64
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 108 VHISLEKLVPACGIR 64
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,219
Number of Sequences: 336
Number of extensions: 2596
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)