Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f06
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   5.1  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.9  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    24   8.9  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 419 GGRAHSPPDVKWLLEPIDIYN 357
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 410 AHSPPDVKWLLEPIDIYNVDAPPTLR 333
           A  PP +K    P+DI N+DA   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 195 ITQIIILRV*FLLHDVIPSPWKSIVNI 115
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 295 PHPSNRNALLLHGRNKQGGGTYP 227
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 351 RATHLEIQVLKSQYSYN 301
           +A HLE+Q+L  QY  N
Sbjct: 305 QARHLEVQILADQYGNN 321


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 161 KNQTRKIIICVITGGRT 211
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 56   TGVRIPQAGTNFSNEICTQQMF 121
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 162 LLHDVIPSPWKSIVNIC*VHISLEKLVPACGIRTP 58
           +L+ V   P K+ +N+    ISLE   P CG+  P
Sbjct: 266 ILYMVSKEPGKACMNM--YDISLESTYPTCGMDWP 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,286
Number of Sequences: 5004
Number of extensions: 40106
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)