Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20f06
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 33 0.13
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 29 2.2
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 28 2.9
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021... 27 5.0
06_03_0416 + 20568087-20568702,20568767-20570313 27 6.6
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207... 27 6.6
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 27 6.6
08_02_1461 - 27299891-27301870 27 8.7
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332 27 8.7
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 32.7 bits (71), Expect = 0.13
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 32 GAFVLKRCTGVRIPQAGTNFSNEICTQQMFTIDFHGE 142
G ++ RCTGV I G N +I T DFHGE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 328 SSKVSV*LQRLPHPSNRNALLLHGRNKQGGGTYPRGLTRGPTTSNYANYNFAG 170
S ++ + LQ LP P + HG GGG G T+ S ANY+F G
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 77 AGTNFSNEICTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARIGTTALLI 253
+GT+ + ++ +D G GIT+C +N+ +K ++ G + R+ +
Sbjct: 29 SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88
Query: 254 SAV 262
+AV
Sbjct: 89 NAV 91
>03_06_0583 +
34901636-34901721,34901805-34901902,34902029-34902167,
34902262-34902290,34902406-34902502,34902593-34902648,
34902759-34902866,34902988-34903044,34905585-34905679,
34905822-34905998,34906086-34906189,34906595-34906664,
34906774-34906833
Length = 391
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 80 PPAGFEHRCIASTRMHRTSHP 18
PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -2
Query: 330 QVLKSQYSYNGYPTLQTETHYCFTAEISRAVVPIRADSQEVLPPVITQIIILR 172
Q S +S + + +Q TH ++ RA+V + V ++ +I+LR
Sbjct: 394 QSYSSNFSSSAFLKIQDSTHKSLLSKEKRAIVLVAGSLSFVTSVIVAVLIVLR 446
>01_01_0254 -
2074095-2074100,2074389-2074462,2074572-2074633,
2074790-2075123,2075271-2075487,2075575-2075685,
2076304-2076840
Length = 446
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 274 RFGLKGGVAVVTILRL*NLYLKVGGASTL*MSMGSSNHLTSG 399
+ G+ G + V+ R + L +GG ++MG + HL +G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 114 C*VHISLE--KLVPACGIRTPVHRFNTNAPDVSSFR 13
C V SL+ + PACG + P H + + P + +FR
Sbjct: 335 CLVKDSLQFGSIAPACGAKDPHHLDSLSEPQILTFR 370
>08_02_1461 - 27299891-27301870
Length = 659
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 292 HPSNRNALLLHGRNKQGGGTYPRGLTRGPTTS 197
H ++ LL GR + GGG + RGL P S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313
>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
Length = 190
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 291 WGSRCNYTETLELVSQGGWRVYVVDVYGLQ 380
W Y++T ELV + GW+ + VD G+Q
Sbjct: 72 WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,168
Number of Sequences: 37544
Number of extensions: 300526
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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