Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f06
         (439 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119502-1|AAM50156.1| 2323|Drosophila melanogaster GH12002p pro...    28   4.8  
AE013599-561|AAF59156.2| 2323|Drosophila melanogaster CG11198-PB...    28   4.8  
AE013599-560|AAF59155.2| 2482|Drosophila melanogaster CG11198-PA...    28   4.8  
AE013599-302|AAF59293.1|  328|Drosophila melanogaster CG12835-PA...    27   8.4  

>AY119502-1|AAM50156.1| 2323|Drosophila melanogaster GH12002p protein.
          Length = 2323

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 372  HRHLQRRRATHLEIQVLKSQYSYNGYPTLQTETH-YCFTAEISR 244
            +RHL+   A HLE+  +K+ Y     PT   + H Y   A++S+
Sbjct: 1341 YRHLEPASAFHLELNRMKT-YDLEALPTANQKMHLYLGKAKVSK 1383


>AE013599-561|AAF59156.2| 2323|Drosophila melanogaster CG11198-PB,
            isoform B protein.
          Length = 2323

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 372  HRHLQRRRATHLEIQVLKSQYSYNGYPTLQTETH-YCFTAEISR 244
            +RHL+   A HLE+  +K+ Y     PT   + H Y   A++S+
Sbjct: 1341 YRHLEPASAFHLELNRMKT-YDLEALPTANQKMHLYLGKAKVSK 1383


>AE013599-560|AAF59155.2| 2482|Drosophila melanogaster CG11198-PA,
            isoform A protein.
          Length = 2482

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 372  HRHLQRRRATHLEIQVLKSQYSYNGYPTLQTETH-YCFTAEISR 244
            +RHL+   A HLE+  +K+ Y     PT   + H Y   A++S+
Sbjct: 1500 YRHLEPASAFHLELNRMKT-YDLEALPTANQKMHLYLGKAKVSK 1542


>AE013599-302|AAF59293.1|  328|Drosophila melanogaster CG12835-PA
           protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 104 CTQQMFTID--FHGEGITSCNKNQTRKIIICVITGGRTSCESARI 232
           C Q+  + +  FH  GI SCN      + + ++TG  T  + ARI
Sbjct: 201 CVQRKLSSEDQFHSSGI-SCNGETDDDVEVAMLTGSLTPSQIARI 244


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,553,890
Number of Sequences: 53049
Number of extensions: 493062
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)