Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f06
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 47  KRCTGVRIPQAGTNFSNEICTQQMFTIDFHGEGITSCNKN 166
           K C G R P     +S+ +CT +M  +D + +    C ++
Sbjct: 162 KSCLGFRKPLISCAYSHLVCTLKMRPLDRYDQSYIQCRED 201


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 26  TSGAFVLKRCTG-VRIPQAGTNFSNEICTQQMFTIDFHGEGI 148
           TS A +L+     ++  Q  T   NE  T+Q+FT+D++   I
Sbjct: 23  TSDAEILEITNAHIKAIQVATRSMNETATRQLFTLDYNNPKI 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,432
Number of Sequences: 27780
Number of extensions: 239348
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)