Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f04
         (173 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41658 Cluster: Late expression factor 5; n=13; Nucleop...    70   1e-11
UniRef50_P24745 Cluster: Uncharacterized 38.0 kDa protein in P14...    67   8e-11
UniRef50_Q15291 Cluster: Retinoblastoma-binding protein 5; n=45;...    34   0.54 
UniRef50_P91144 Cluster: Annexin family protein 4; n=2; Caenorha...    32   2.2  
UniRef50_Q97V12 Cluster: Putative uncharacterized protein; n=3; ...    30   8.8  

>UniRef50_P41658 Cluster: Late expression factor 5; n=13;
          Nucleopolyhedrovirus|Rep: Late expression factor 5 -
          Autographa californica nuclear polyhedrosis virus
          (AcMNPV)
          Length = 265

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = -3

Query: 96 MSFNDGVVKAQTDPFALKRGGHNVQKWTSYA 4
          MSF+DGVVKAQTDPFALKRGGHNVQKWTSYA
Sbjct: 1  MSFDDGVVKAQTDPFALKRGGHNVQKWTSYA 31


>UniRef50_P24745 Cluster: Uncharacterized 38.0 kDa protein in
           P143-LEF5 intergenic region; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 38.0 kDa
           protein in P143-LEF5 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 320

 Score = 66.9 bits (156), Expect = 8e-11
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +1

Query: 31  MASSLQSKWICLRLNDAIIKRHVLVLSEYAD 123
           MASSLQSKWICLRLNDAIIKRHVLVLSEYAD
Sbjct: 1   MASSLQSKWICLRLNDAIIKRHVLVLSEYAD 31


>UniRef50_Q15291 Cluster: Retinoblastoma-binding protein 5; n=45;
           Eukaryota|Rep: Retinoblastoma-binding protein 5 - Homo
           sapiens (Human)
          Length = 538

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 50  ANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINFLNK 166
           A G +  L T S + + SF  +T TSNT A+KSI F  K
Sbjct: 171 AKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARK 209


>UniRef50_P91144 Cluster: Annexin family protein 4; n=2;
           Caenorhabditis|Rep: Annexin family protein 4 -
           Caenorhabditis elegans
          Length = 351

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +1

Query: 1   EGVTGPFLHIMASSLQSKWICLRLNDAIIKRHVLVL 108
           EGV G  +H++  + + + + +R+ND ++ +HV +L
Sbjct: 156 EGVVGKMMHLLLCNNREEGLGVRVNDELVDKHVKIL 191


>UniRef50_Q97V12 Cluster: Putative uncharacterized protein; n=3;
           Sulfolobaceae|Rep: Putative uncharacterized protein -
           Sulfolobus solfataricus
          Length = 158

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 26  TLWPPRFKANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINFLNK 166
           +++ P F+ N S+  L    L  +  F A  QTS  ++  + N LN+
Sbjct: 47  SIYSPNFRKNTSIYLLVLSILEGITGFGAGPQTSGIISTLTFNLLNR 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,070,166
Number of Sequences: 1657284
Number of extensions: 2027557
Number of successful extensions: 4822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4820
length of database: 575,637,011
effective HSP length: 37
effective length of database: 514,317,503
effective search space used: 10286350060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)