Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f04
         (173 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   0.87 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   1.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   2.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    20   2.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    20   2.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    19   3.5  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    19   4.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    19   4.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 0.87
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 90  FNDGVVKAQTDPFALKRGGHNVQKWTSYA 4
           F D V +A   PF +      + K+ S+A
Sbjct: 121 FKDLVAEAYVSPFRIDNESQELLKYPSFA 149


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 173 FFFYSKNLYFS 141
           F F+ KNLY+S
Sbjct: 172 FTFHKKNLYYS 182


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 35  PPRFKANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINFLN 163
           P  F    S  AL +P+        +S   SNT ++ S+N LN
Sbjct: 216 PAEFPTTSSSSALESPNPASR----SSCLGSNTSSMLSLNCLN 254


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 35  PPRFKANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINFLN 163
           P  F    S  AL +P+        +S   SNT ++ S+N LN
Sbjct: 5   PAEFPTTSSSSALESPNPASR----SSCLGSNTSSMLSLNCLN 43


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 35  PPRFKANGSVCALTTPSLNDMFSF*ASTQTSNTLALKSINFLN 163
           P  F    S  AL +P+        +S   SNT ++ S+N LN
Sbjct: 5   PAEFPTTSSSSALESPNPASR----SSCLGSNTSSMLSLNCLN 43


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 173 FFFYSKNLYFSKPRYLRSAYSLKTRTCRLM 84
           F +YSK +++SK     S +   T   R++
Sbjct: 224 FSWYSKKVFYSKIIISGSIFMTTTSFYRIL 253


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 172 FFFIQKIYTFQSQGI*GL 119
           FF++  IYT  S+ + G+
Sbjct: 88  FFYLSYIYTTYSRKLSGI 105


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 172 FFFIQKIYTFQSQGI*GL 119
           FF++  IYT  S+ + G+
Sbjct: 44  FFYLSYIYTTYSRKLSGI 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,914
Number of Sequences: 336
Number of extensions: 520
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 37
effective length of database: 110,153
effective search space used:  2203060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)