Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20f04
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     28   0.19 
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   1.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   1.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   1.8  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    23   5.4  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    23   5.4  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    23   7.1  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    22   9.4  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 41  RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLNKKK 172
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF N +K
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQNYEK 331


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 173 FFFYSKNL-YFSKPRYLRSAYSLKTRTCRLMMASLRRKQIH 54
           + FYSK    F  P Y  S  +  TRT   + ASL  +  H
Sbjct: 407 YLFYSKKYSQFYTPGYSFSTPNFNTRTLYAIYASLHDQAFH 447


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 31  MASSLQSKWICLRLNDAIIKRHV 99
           +  +LQ    C+RLNDA+I++ +
Sbjct: 429 LIQALQKLQTCMRLNDALIEQRL 451


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  LTTPSLNDMFSF*ASTQTSNTLALKSINFLNK 166
           L    L D+FS    T++S+ +A + + FLNK
Sbjct: 319 LPMKELIDLFSIDKLTKSSSIVAFEKLYFLNK 350


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 44  FKANGSVCALTTPSLND 94
           FK+NG+V A    +LND
Sbjct: 238 FKSNGTVTAANASTLND 254


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 110 LKTRTCRLMMASLRRKQIHLL*SEEAI 30
           + T  CRL +  ++R   HLL  EE +
Sbjct: 60  IPTTRCRLRLLKMQRIHDHLLMEEEYV 86


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 81  GVVKAQTDPFALKRGGHN 28
           G+     DP  +KR GHN
Sbjct: 237 GLKPTSVDPSTVKRAGHN 254


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  PPRFKANGSVCALTTPSLNDMFS 103
           PP+ + N  +    TPSL D +S
Sbjct: 256 PPKPEQNEIIITKDTPSLKDKYS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,163
Number of Sequences: 5004
Number of extensions: 9098
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)