Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20e22
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0132 - 20058638-20058907 29 3.3
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 3.3
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 4.4
01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165 29 4.4
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 5.8
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 5.8
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 28 7.7
>02_04_0132 - 20058638-20058907
Length = 89
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 230 RPFERPWC*WFATCRRPPFA 171
+PF PWC + C +PPF+
Sbjct: 14 KPFVAPWCRYPLLCNQPPFS 33
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 667 DAMAALLFKIVFCDLRATCIIKFINTSVFNCTF*CSSQSK 548
D+ +L + +C+ A IIK ++T VF C C+S+S+
Sbjct: 456 DSQVSLSISVAYCEQCARWIIKVLST-VFPCIKACASESE 494
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 152 PAVCCGGFFVFATCCCQCPYHRYHLLKQ 69
P F A+CCC+ P H+ HL Q
Sbjct: 105 PVDATAPFVASASCCCRHPVHQQHLRLQ 132
>01_07_0125 - 41220550-41220555,41220656-41220725,41220811-41222165
Length = 476
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 161 KGLPAVCCG--GFFVFATCCCQCPYHRYHLLKQSWLSSISRDISLS 30
K LP + CG G ++F T + + +YHL ++W I I S
Sbjct: 386 KALPTIFCGDTGGYIFHTPPTELFFTQYHLSSRTWSPLIDGSIGNS 431
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 213 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 82
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 177 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 220
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 213 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 82
++LMVC + + A+ + EG+ G + + L V ++++S
Sbjct: 155 IILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVS 198
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 489 KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 638
K RLK++ P I ++ D + +N + L++ + HV +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,494
Number of Sequences: 37544
Number of extensions: 334840
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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