Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e19
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   318   3e-88
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   318   5e-88
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.60 
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   1.1  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.8  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.8  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   1.8  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.8  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.8  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   4.2  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   4.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   7.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.4  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   7.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  318 bits (782), Expect = 3e-88
 Identities = 143/206 (69%), Positives = 169/206 (82%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLVKNCGRDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
           +SEALEA RIC NKYLVK  G+D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 578
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 579 FEKLREEGRLANDGCIVQYRPEHGPL 656
           + + R  G +  DGC  ++  + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  318 bits (781), Expect = 5e-88
 Identities = 143/206 (69%), Positives = 169/206 (82%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 219 SSEALEAGRICCNKYLVKNCGRDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
           +SEALEA RIC NKYLVK  G+D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 399 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 578
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 579 FEKLREEGRLANDGCIVQYRPEHGPL 656
           + + R  G +  DGC  ++  + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 63  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 239
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 240 G 242
           G
Sbjct: 94  G 94


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 309 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 476
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 477 QVIEALRRAKFKFPGRQKIYVSK 545
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 608 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 477
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 120 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 239
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 608 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 477
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 608 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 477
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 608 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 477
           +A  F ++L    FI C +P+L Y+  +  G  +   +  + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 RERPLTTFHCACTWCPTNMNS 216
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 451 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 609
           C L+T         C +  + SP+++RS Y  +G++ S  +  +     RAA+
Sbjct: 17  CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 413  STLRLAKRTTHPSLEPISSS 354
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 418 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSC 591
           H+ +LDS S   P AL      +  +   VPS SSP VK ++    G S S    SLRS 
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRSN 480

Query: 592 VKRAASPMTAV 624
               +S  +++
Sbjct: 481 ELNGSSASSSI 491


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 239  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 123
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 481 SSRLCAVPSSSSPDVKRSTYQRSGVS 558
           SS +   P+S SPD+K   YQ  G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 106 VGVYLIPRSVSSIWV 150
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 141  DLGKKRATVDDFPLCVHLVSDEYEQL 218
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 DQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 386
           D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 860 DNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,062
Number of Sequences: 5004
Number of extensions: 68116
Number of successful extensions: 232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)