Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e18
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    28   0.96 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   6.8  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   6.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.8  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   9.0  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   9.0  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIE 469
           +QV+PD   S +  R++N F+ND  E
Sbjct: 46  KQVHPDTGISNQAMRILNSFVNDIFE 71


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 143  ISKNTESNVEDIPSHKAKSVRKKL 214
            I K+ E  V D PS +  +VRK L
Sbjct: 1339 IGKHIEKTVNDTPSEEKATVRKNL 1362


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 354 CPWSKPLLAIG 386
           CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 90 KKMLFSFLSYTKLNMVSAPNN 28
          KK LFS L   +LN VS P N
Sbjct: 18 KKELFSLLIADELNFVSEPTN 38


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 212 LEIEQALDAILNKNTSSID***VLVKMSNLMKNFFTE 322
           + +E  LD ++N    ++    +L+KMS++MK   TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 266 LLSWYFCLKSHQA 228
           LL+WYFC + H +
Sbjct: 175 LLNWYFCTQEHDS 187


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
 Frame = -2

Query: 180 GMSSTLDSVFLLIMAGLTTIMN-----TRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKF 16
           G     + VF LI   L T+M        +   +++K L   ++  K   +S    KY  
Sbjct: 88  GSEEIWEGVFSLIAVVLITVMGFAMLRVSHLQEKWRKKLMKSIANRKAKGISNWGKKYSM 147

Query: 15  IFIPF 1
             +PF
Sbjct: 148 FLLPF 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,215
Number of Sequences: 5004
Number of extensions: 33638
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)