Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20e15
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 52 1e-07
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 51 1e-07
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 50 4e-07
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 49 7e-07
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 48 2e-06
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 43 5e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 43 5e-05
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 41 2e-04
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 40 3e-04
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 40 3e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 40 4e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 40 4e-04
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 40 4e-04
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 6e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 39 8e-04
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 38 0.001
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 38 0.001
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 38 0.002
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.005
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.013
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 35 0.013
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 34 0.022
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 34 0.022
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 33 0.029
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 33 0.050
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.088
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 31 0.20
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 30 0.27
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 30 0.27
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 30 0.36
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 29 0.62
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 29 0.62
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 1.9
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 1.9
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 27 2.5
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 26 4.4
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc... 26 5.8
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 5.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 5.8
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 25 7.7
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.7
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 51.6 bits (118), Expect = 1e-07
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTT--CGHLFHSNCIHKWLNSSTTCPQCRHDCDKTSIIRVH 241
C +C+++M + + +T CGH+F NC+ KWL + TCP CR + ++ H
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHETVGSAH 162
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 20 LAGSA*KSLKLTLYNMLLPACSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSST-TCP 196
L A ++ + +Y +L CSVC N W++ L CGH F SNC+ + T TCP
Sbjct: 620 LINQAYETQEAQVYKGMLK-CSVC--NFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCP 676
Query: 197 QCRHDCDKTSIIRVHL 244
QC + I+ +HL
Sbjct: 677 QCETPFSVSDILTIHL 692
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCRHDCDKTSIIRVHLTFNYE 259
C +C + +KQ TTCGHL+ S C+ WL S++CP C+ +K + Y
Sbjct: 1092 CIICRDIIKQG---FITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAY-------YI 1141
Query: 260 GEPEAVSKLKQAISEIDKSKRELKLIKTKC-KMLKRDAEKQSKASKM 397
GE + ++ ++ +K L+++ + + + K+S SK+
Sbjct: 1142 GESRDIYSRQEFVTGFNKRDERLEILDDEAYRQISNMELKESFGSKI 1188
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 48.8 bits (111), Expect = 7e-07
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCRHDCDKTS 226
C++C E K + ++ C H FH NCI WL + TC CR D S
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNS 444
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 71 LPACSVCHENMKQWET-ILSTTCGHLFHSNCIHKWLNSSTTCPQCRH 208
LP C VC E M T +++ C H FH C+ KW NSS CP CR+
Sbjct: 205 LPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSS--CPVCRY 249
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCG---HLFHSNCIHKWLNSSTT--CPQCR 205
C++C+ + T+ + CG H FH++C++KW SS + CP CR
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 42.7 bits (96), Expect = 5e-05
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 119 ILSTTCGHLFHSNCIHKWLNSSTTCPQCRHDCDKTSII 232
I CGH FH++C+ W + TCP CR + K ++
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVL 88
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 62 NMLLPACSVCHENMK----QWETILSTTCGHLFHSNCIHKWLNSSTTCP 196
N ++ C C N Q T+ TC H FH +CI +WLN+ CP
Sbjct: 46 NHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCP 94
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNS-STTCPQCRHDCDKTSIIRVHL 244
CSVC N ++W+ + + CGH F CI K + + CP C + +I +HL
Sbjct: 627 CSVC--NFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIPIHL 680
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Frame = +2
Query: 5 ISKFKLAGSA*KSLKLTLYNMLLPACSVCHENMKQWETILST-TCGHLFHSNCIHKWLNS 181
+SK + LK LY CSVC + + +I S TC H+FH +CI KW +
Sbjct: 177 LSKLDMTSRMIVELKNRLYE-----CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKN 231
Query: 182 ST--------TCPQCRHDCDKTSI 229
S CP C+ + +TS+
Sbjct: 232 SIEQRNEDAWRCPYCQSNQTETSL 255
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCRHDCDKTSII 232
CS+C E + +T CGH+F +CI+ W + + CP CR + II
Sbjct: 256 CSLCMEFI---HCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKII 303
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 80 CSVCHENMK-QWETILSTTCGHLFHSNCIHKWLNSS-TTCPQCR 205
C VC N + E C H FH CI +WL SS +CP CR
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 39.5 bits (88), Expect = 4e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 134 CGHLFHSNCIHKWLNSSTTCPQCR 205
CGH+ H +C+ WL TCP CR
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICR 351
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCR 205
C +C E +++ T T CGH + C+ WL S +CP CR
Sbjct: 85 CPICTEALQRPFT---THCGHTYCYECLLNWLKESKSCPTCR 123
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCR 205
C +CHE + L T+C H F S CI +L CP CR
Sbjct: 29 CLICHEYFR---APLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWL-NSSTTCPQC 202
C +C E+ + + +++ C H FH CI KW+ + CP C
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNS-STTCPQCRHD 211
C +C+ + + + C H+FH+ CI W+ + +CP C D
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 37.5 bits (83), Expect = 0.002
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 128 TTCGHLFHSNCIHKWLNSSTTCPQCR 205
T C HL+H C+ +W+ + + CP CR
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVCR 670
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 77 ACSVCHENMKQWETILST-TCGHLFHSNCIHKWLNS-STTCPQCR 205
+C +C E + C H FH CI +WL + + +CP CR
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 134 CGH-LFHSNCIHKWLNSSTTCPQC-RH-DC 214
CGH F +CI +W++ S TCP C RH DC
Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPICKRHVDC 66
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 80 CSVCHENM-KQWETILSTTCGHLFHSNCIHKWLNSSTTCPQC-RHDCDKTSIIRVHLTFN 253
C +C E M E ++ +C H H C +++ ++ CP C + + S+ R+ L
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINVNSLFRI-LDME 329
Query: 254 YEGEP 268
E +P
Sbjct: 330 IERQP 334
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 33.9 bits (74), Expect = 0.022
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 119 ILSTTCGHLFHSNCIHKWLNSSTTCPQCR--HDCDKTSIIRVHLTFNYEGEPEAVSKLKQ 292
I + CG+L S +W TTC QC+ + ++ + + V + P A+ KLK
Sbjct: 8 IFCSECGNLLESTTA-QW----TTCDQCQSVYPSEQFANLVVETKSSASAFPSAL-KLKH 61
Query: 293 AISEIDKSKRELKLIKTKCKMLKRD 367
+I +++ K E I+ KC D
Sbjct: 62 SIVQVESQKEEAATIEEKCPKCGND 86
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 33.9 bits (74), Expect = 0.022
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 134 CGHLFHSNCIHKWLNSSTTCPQCRHD 211
C H+FH++CI WL +S + QC D
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMD 77
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 77 ACSVCHENMKQWE--TILSTTCGHLFHSNCIHKWLNSSTTCP--QCRHDCDKTSIIRVHL 244
AC+ C + E +I + CGHLF S C + + CP CR K I ++L
Sbjct: 146 ACAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPLYL 205
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.050
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 86 VCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCRHD 211
VC K + + ++TTCGH F C + TC QC D
Sbjct: 253 VCLICKKDYRSPIATTCGHHFCEQCAITRYRKTPTCIQCGAD 294
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 31.9 bits (69), Expect = 0.088
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCR 205
C +C + ++ ++S CGH F C+ + L S CP CR
Sbjct: 169 CQICFGML--YDPVVSP-CGHTFCGPCLMQALTQSPQCPTCR 207
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Frame = +2
Query: 74 PACSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSS---TTCPQCR--HDCD 217
P C +C + + + C H +H CI LN S +C CR HD +
Sbjct: 190 PECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRKYHDLE 242
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCIHKWLNSSTT---CPQCRHDCDKTSII 232
C +C ++ E + T CGH+F + CI L ++ CP CR +I
Sbjct: 206 CVICLDSP---ENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 80 CSVCH-ENMKQWETILSTTCGHLFHSNCIHKW-LNSSTTCPQCR 205
C++C E ++ C H+FH CI + L +S CP C+
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCK 541
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.36
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 134 CGHLFHSNCIHKWLNSSTTCPQCRHDCD 217
CGH H++ +W ++ T CP DC+
Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 29.1 bits (62), Expect = 0.62
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 122 LSTTCGHLF-HSNCIHKWLNSSTTCPQCRHDCDKTSIIRVHLTFNYEGEPEAVSKLKQAI 298
L T G ++ H NC ++ + H DKT + F + EA+ K + I
Sbjct: 724 LLPTVGEIYQHENCRIAYV-AQAAFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVI 782
Query: 299 SEIDKSKRELKLIK---TKCKMLKRDAEKQSKAS 391
SE D+ + K+ K T+ K+L + ++ K S
Sbjct: 783 SEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNS 816
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 29.1 bits (62), Expect = 0.62
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 119 ILSTTCGHLFHSNCIHKWLNSSTTCP 196
ILST C H + + I LN + CP
Sbjct: 190 ILSTACNHFYEKDAILSLLNPTCVCP 215
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +2
Query: 134 CGHLFHSNCIHKWL--NSSTTCPQC 202
CGH+ H +C+ W N+ P C
Sbjct: 806 CGHIGHESCLRSWYFDNTDDALPVC 830
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 38 KSLKLTLYNMLLPACSVCHENMKQWETILSTTCGHLFHSNCIHKW 172
K+ KL + + C+VC + + T CGH+ +C+ +
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDY 204
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 92 HENMKQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCRHDCDKTSII 232
H N+ W T +TC +F L +ST Q + DKTS +
Sbjct: 78 HSNLGSWTTTAQSTC-RIFDLKHPENDLWTSTNMDQFSFENDKTSFV 123
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 38 KSLKLTLYNMLLPACSVCHENMKQWETILSTTC 136
KS +L ++ A S+ ++ + +W TIL TC
Sbjct: 339 KSPRLFEMQLMPHAISILNDEIAEWSTILVATC 371
>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 454 ESQRNASKIHGCKNME---SVSNRRCTSYYRKTLRCNHRMREGQWFPWGSD 597
+SQR +++G K M SNR YR TL+ + + E +++ G D
Sbjct: 94 QSQRAMVEVYGAKYMSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGED 144
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 219 LSQSWRHWGQVVELFSHLCMQLLWN 145
LS SWRH G++V C +WN
Sbjct: 336 LSWSWRHSGRIVSACQEYC--YVWN 358
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Frame = +2
Query: 80 CSVCHENMKQWETILSTTCGHLFHSNCI-----HKWLNSSTT-----CPQCRHDCDKTSI 229
CSVC + + CGH C+ K+ +SST+ CP CR + + S+
Sbjct: 606 CSVCLDPCLA--PVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSL 663
Query: 230 IRVHLTFNYEGEPEAVSKLKQAISEIDKSKRELKL 334
+ + G ++ +L+ +++ + +KL
Sbjct: 664 VDATILQAIHGPLNSLKQLELDMNQSFSEQESIKL 698
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 275 VSKLKQAISEIDKSKRELKLIKTKCKMLKRDAEK 376
+SKL + I + + ++ + + K K+++RD +K
Sbjct: 281 LSKLDEKILSLQRETDDVNIAQNKSKLIQRDLQK 314
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = +2
Query: 62 NMLLPACSVCHENM-----KQWETILSTTCGHLFHSNCIHKWLNSSTTCPQCR-HDCDK 220
N L C C E + K+ + +T CGH++ +C S + +C +DC +
Sbjct: 183 NDTLMVCPRCQEPLGTSKSKEKSALWATKCGHVYCGSCAKVLKTSKRSQSKCLVNDCGR 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,920
Number of Sequences: 5004
Number of extensions: 54022
Number of successful extensions: 205
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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