Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e08
         (121 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    19   3.5  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    18   8.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    18   8.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    18   8.1  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 16  VHILKIGTIQRRL 54
           VH++++GT  RR+
Sbjct: 156 VHLVRVGTEPRRV 168


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/25 (28%), Positives = 10/25 (40%)
 Frame = -1

Query: 109 KKCGTLHDFACHPCAGAMLIFSVSF 35
           +KCG      C P   A   + + F
Sbjct: 243 EKCGLKKIEFCRPTFSAARFYGIDF 267


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 85 FACHPCAG 62
          FAC  CAG
Sbjct: 53 FACDGCAG 60


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 85 FACHPCAG 62
          FAC  CAG
Sbjct: 53 FACDGCAG 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,593
Number of Sequences: 336
Number of extensions: 326
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 20
effective length of database: 115,865
effective search space used:  2201435
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)