Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e08
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   0.45 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    23   5.6  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    23   5.6  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    22   9.8  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 110 KKMWNASRFCVSSLRRGHAN 51
           K + +ASRFCV SL+R  AN
Sbjct: 575 KYLPSASRFCVESLKRQKAN 594


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 107 KMWNASRFCVSSLRRGHANLLCIVPIFSICTA 12
           K+WN+       L RGH + +  +  + +C A
Sbjct: 197 KVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQA 228


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 67  AGAMLIFSVSFQFLVYVLPKQV 2
           +G+ L+F   FQ+L    PK V
Sbjct: 438 SGSFLLFQSMFQYLAAAYPKYV 459


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 515

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 71 LRRGHANLLCIVPIFSICTAEAS 3
          LR    N LC    FS+CT  AS
Sbjct: 3  LRPWSRNFLCSCRGFSVCTPYAS 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,446
Number of Sequences: 5004
Number of extensions: 5815
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)