Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e08
         (121 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   0.92 
05_01_0172 + 1194563-1194934,1196051-1196120,1196769-1196833,119...    25   8.6  

>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 25  LKIGTIQRRLAWPLRKDDTQNREAFHIFFKKK 120
           L +G  +RR   PL  DD ++R   H+  KKK
Sbjct: 437 LALGQRKRRRCPPLTSDDRRHRRILHMLKKKK 468


>05_01_0172 +
           1194563-1194934,1196051-1196120,1196769-1196833,
           1197608-1197958
          Length = 285

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 82  ACHPCAGAMLIFSVSFQFL 26
           +CH C+G + ++SV F F+
Sbjct: 142 SCHYCSGYLFMYSVIFVFV 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,051
Number of Sequences: 37544
Number of extensions: 34241
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 20
effective length of database: 14,042,468
effective search space used: 266806892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)