Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e08
         (121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    29   0.61 
AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical...    26   3.2  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    25   7.5  
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    25   7.5  

>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 103 CGTLHDFACHPCAGAMLIFSVSFQFLVYVL 14
           C  LH F CH  A +  I  +SF +  Y+L
Sbjct: 100 CYFLHVFVCHCLAHSQWILMISFLYRYYIL 129


>AF016417-3|AAB65281.1|  457|Caenorhabditis elegans Hypothetical
           protein F17A9.4 protein.
          Length = 457

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 34  GTIQRRLAWPLRKDDTQNREAFHIFFKKK 120
           G    +LA+   +D T+NREAF + F +K
Sbjct: 285 GGTYEKLAFHHMRDSTRNREAFFLEFAEK 313


>AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical
           protein K09C6.1 protein.
          Length = 661

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 74  MTRKIVKRSTFFLK 115
           MTRK VKRS FF+K
Sbjct: 1   MTRKFVKRSKFFVK 14


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 22  ILKIGTIQRRLAWPLRKDDTQNREAFHIFF 111
           ++K GT++R +   +  DD  +   F++FF
Sbjct: 67  LIKAGTVERLVECLVGSDDMMDSRHFNVFF 96


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 29  KLERYRED*-HGPCARMTRKIVKRSTFF 109
           KLE+++ D   GP  RM RK++    F+
Sbjct: 849 KLEKFKLDLTEGPTTRMRRKLIPNRNFY 876


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,890
Number of Sequences: 27780
Number of extensions: 34548
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)