Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e08
         (121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    18   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 56  ANLLCIVP 33
           ANL CIVP
Sbjct: 601 ANLQCIVP 608


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -1

Query: 100 GTLHDFACHPCAGAMLIFSVSFQFLVYVLPK 8
           G +  F  H C   + ++ V    L   LPK
Sbjct: 572 GNISHFINHSCDPNLAVYGVWINCLDPNLPK 602


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 101  WNASRFCVSSLRRGHANLLCIVP 33
            WN   F  S    G  N+  I+P
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILP 1186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,622
Number of Sequences: 438
Number of extensions: 306
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)