Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e07
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   244   5e-65
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    35   0.051
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    35   0.051
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical ...    32   0.27 
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   4.4  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  244 bits (596), Expect = 5e-65
 Identities = 113/131 (86%), Positives = 123/131 (93%)
 Frame = +1

Query: 37  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 216
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60

Query: 217 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 396
            V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61  FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120

Query: 397 VAKECADLWPR 429
           VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 455 LEYTFKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFMIR 595
           LE  F +++      PSTS S+P N N R R L +C     +YT M R
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 492


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 455 LEYTFKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFMIR 595
           LE  F +++      PSTS S+P N N R R L +C     +YT M R
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 492


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 467 FKISSCVLLSFPSTSKSNPKNDNLRNRHL-QCKCAKLEYTFMIR 595
           F +++      PSTS S+P N N R R L +C     +YT M R
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMMHR 45


>AL032624-3|CAL36506.1|  232|Caenorhabditis elegans Hypothetical
           protein Y49A10A.2 protein.
          Length = 232

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 96  PSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFWGHDCGHS 230
           P G+   L R +R K+S  ++  +  +  ++T GG+ WG  CG +
Sbjct: 47  PQGAIFALHRDYRFKKST-EQHTKAIKEAKETLGGKLWGSQCGRA 90


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = -2

Query: 242 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 66
           +PF+ T     +  P A ++ R P+ P+   T    AP      +  PT  PR I    P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188

Query: 65  AEPPRPLLDILLYQNFE 15
            +P RP+  I   Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 486 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 355
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 88  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 255
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 256 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 339
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 354 DYDTRIVLKVYKYSITPSERFPL 286
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 197 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 105
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 87  PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 182
           PG P G+ N       G    CD CP  + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 495 PFLVHQNQTRKMIICVIDIYNVNA 566
           PF + QN  RKMI  V+  Y++N+
Sbjct: 345 PFRIPQNNNRKMIEVVVSQYSLNS 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,584
Number of Sequences: 27780
Number of extensions: 316452
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)