Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20e06
         (365 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BPL5 Cluster: Debaryomyces hansenii chromosome E of s...    32   3.7  
UniRef50_A5E1W0 Cluster: PAB-dependent poly(A)-specific ribonucl...    31   8.6  

>UniRef50_Q6BPL5 Cluster: Debaryomyces hansenii chromosome E of
           strain CBS767 of Debaryomyces hansenii; n=2;
           Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
           E of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 907

 Score = 31.9 bits (69), Expect = 3.7
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +3

Query: 69  YISSRNVVNLKMWFMRAR*IYITIHLYINK*INIKLSPERIKISHAPITSKLFRIVLRK* 248
           Y S R +V++++ FMR+  + I I   + K  N++ S  R+    A I S+LF+++    
Sbjct: 643 YPSKRILVSVEIQFMRS--LNILIDSLMKK-YNVEKSTVRVNTKGANIDSELFKVLTMNN 699

Query: 249 LKAISENVF 275
              ISE ++
Sbjct: 700 FDRISETIY 708


>UniRef50_A5E1W0 Cluster: PAB-dependent poly(A)-specific
           ribonuclease subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent
           poly(A)-nuclease); n=1; Lodderomyces elongisporus NRRL
           YB-4239|Rep: PAB-dependent poly(A)-specific ribonuclease
           subunit PAN2 (EC 3.1.13.4) (PAB1P-dependent
           poly(A)-nuclease) - Lodderomyces elongisporus (Yeast)
           (Saccharomyces elongisporus)
          Length = 1234

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 200 TNLDPFR*QFNIYLFIYV*MNRYVNLTCTHKPHLQVHDVS-RTNI 69
           TNL   R   NI  ++   MN+Y  + CT   H   H +  RT+I
Sbjct: 774 TNLANIRKNLNILTYLEYSMNQYKTIPCTQHQHFHPHTLEIRTSI 818


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,530,449
Number of Sequences: 1657284
Number of extensions: 3875846
Number of successful extensions: 5521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5515
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)